View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9691_low_10 (Length: 338)
Name: NF9691_low_10
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 43186018 - 43186330
Alignment:
| Q |
13 |
acctgtgaagagcacaagcctggcacttgttgcnnnnnnnctctaacctctggaaaacctacatcgcagagcggaaaatggttgctaactcaacatttct |
112 |
Q |
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| T |
43186018 |
acctgtgaagagcacaagcctggcacttgttgcaaaaaacctctaacctctggaaaacctacatcgcagagtggaaaatggttgctaagtcaacatttct |
43186117 |
T |
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| Q |
113 |
tcagatgttatgaagctaaaacaaccactaacatcttagcaattggttttttcaattggtaaatccaacttaagccaaaatgaatggtttaaaaataacc |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186118 |
tcagatgttatgaagctgaaacaaccactaacatcttagcaattggttttttcaattggtaaatccaacttaagccaaaatgaatggtttaaaaataacc |
43186217 |
T |
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| Q |
213 |
actgttgtcgattgcagatcgcggagaagagtggtttgcttgaaattggctatgctacgagcta--tacagctgctatttaacaacaatgatgataaaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |
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| T |
43186218 |
actgttgtcgattgcagatcgcggagaagagtggtttgcttgaaattggctatgctacgagctatgtacagctgctatttaacaacaatgatgattacaa |
43186317 |
T |
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| Q |
311 |
ccgataattttct |
323 |
Q |
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| ||||||||||| |
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| T |
43186318 |
ctgataattttct |
43186330 |
T |
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