View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9691_low_11 (Length: 324)
Name: NF9691_low_11
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 10141486 - 10141189
Alignment:
| Q |
19 |
atcattccagtgattgatcttgagaaaatttcagagcaactcgagtgcaaaaagttaagagatacatgtgaaagatggggttgtttcagaatcattaacc |
118 |
Q |
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| T |
10141486 |
atcattccagtgattgatcttgagaaaatttcagagcaactcgagtgcaaaaagttaagagatgcatgtgaaagatggggttgtttcagaatcattaacc |
10141387 |
T |
|
| Q |
119 |
attctattcctttgtcccttatggctgagatgaaaatggtcattgaagctcttcatgaccttcctacagatataaagaaaaacaacaaagatgccattcc |
218 |
Q |
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| T |
10141386 |
actctattcctttgtcccttatggctgagatgaaaatggtcattgaagctcttcatgaccttcctatagatataaagaaaaacaacaaagatgccattcc |
10141287 |
T |
|
| Q |
219 |
tggaagtggttaccttgcaccaagtgcttttaaccctctcttacaatctttcggcctctatgatatgggttcttcacaagccatgcatgatctctgct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10141286 |
tggaagtggttaccttgcaccaagtgcttttaaccctctcttacaatctttcggcctctatgatatgggttcttcacaagccatgcatgatttctgct |
10141189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 31 - 316
Target Start/End: Complemental strand, 10089838 - 10089553
Alignment:
| Q |
31 |
attgatcttgagaaaatttcagagcaactcgagtgcaaaaagttaagagatacatgtgaaagatggggttgtttcagaatcattaaccattctattcctt |
130 |
Q |
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|||||||||||||| |||||||||||| |||||||||| ||||||||| || ||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
10089838 |
attgatcttgagaagatttcagagcaattcgagtgcaacaagttaagaaatgcatgtgaaaaatggggttgtttcaggatcattaaccattctattcctt |
10089739 |
T |
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| Q |
131 |
tgtcccttatggctgagatgaaaatggtcattgaagctcttcatgaccttcctacagatataaagaaaaacaacaaagatgccattcctggaagtggtta |
230 |
Q |
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| T |
10089738 |
tgacccttatggatgagatgaaaatggttgttgtagctcttcacgaccttcctatggatatcaagaaaaacaataaagatgtcattcctggaagtggtta |
10089639 |
T |
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| Q |
231 |
ccttgcaccaagtgcttttaaccctctcttacaatctttcggcctctatgatatgggttcttcacaagccatgcatgatctctgct |
316 |
Q |
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| ||| |||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||| ||||| || || ||| |||||| |
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| T |
10089638 |
ctttggaccaagtgtttttaaccctctcatagaatctgtcggcctctatgatatgggttcttcgcaagctatacaagatttctgct |
10089553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 10146496 - 10146201
Alignment:
| Q |
21 |
cattccagtgattgatcttgagaaaatttcagagcaactcgagtgcaaaaagttaagagatacatgtgaaagatggggttgtttcagaatcattaaccat |
120 |
Q |
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|||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||| |
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| T |
10146496 |
cattccagtgattgatattgagaagatttcagagcaattcgagtgcaaaaagttaagagatgcatgtgaaaaatggggttgttttaggatcattaaccac |
10146397 |
T |
|
| Q |
121 |
tctattcctttgtcccttatggctgagatgaaaatggtcattgaagctcttcatgaccttcctacagatataaagaaaaacaacaaagatgccattcctg |
220 |
Q |
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|| ||||||||| | ||||||||||| |||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||| |
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| T |
10146396 |
tccattcctttgacacttatggctgaaatgagaatggttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgtcatttctg |
10146297 |
T |
|
| Q |
221 |
gaagtggttaccttgcaccaagtgcttttaaccctctcttacaatctttcggcctctatgatatgggttcttcacaagccatgcatgatctctgct |
316 |
Q |
| |
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|||| |||||| |||||||||||||||| ||||| || ||| ||||||||||||||||||| |||| | ||||| |||| ||||||||| |||||| |
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| T |
10146296 |
gaaggggttactttgcaccaagtgctttaaacccactattagaatctttcggcctctatgacatggatgcttcataagctatgcatgatttctgct |
10146201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 31 - 299
Target Start/End: Original strand, 11300904 - 11301172
Alignment:
| Q |
31 |
attgatcttgagaaaatttcagagcaactcgagtgcaaaaagttaagagatacatgtgaaagatggggttgtttcagaatcattaaccattctattcctt |
130 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||| |||||||||||| ||||||||| |||||||||||| || || || |||||||||||||||| |
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| T |
11300904 |
attgatcttgagaagattttagagcaattcgagtgcaagaagttaagagatgcatgtgaaaaatggggttgttttaggattatcaaccattctattcctt |
11301003 |
T |
|
| Q |
131 |
tgtcccttatggctgagatgaaaatggtcattgaagctcttcatgaccttcctacagatataaagaaaaacaacaaagatgccattcctggaagtggtta |
230 |
Q |
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|| ||||||||| |||||||||||| || || |||||||||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||| |
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| T |
11301004 |
tgacccttatggatgagatgaaaatagttgttatagctcttcatgaccttcctatggataggaagaaaaacaataaagatgtcattcctggaagtggtta |
11301103 |
T |
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| Q |
231 |
ccttgcaccaagtgcttttaaccctctcttacaatctttcggcctctatgatatgggttcttcacaagc |
299 |
Q |
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| ||| ||||| || |||||||||| || || ||||| | ||||||||||||||||||||||||||||| |
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| T |
11301104 |
ctttggaccaactgtttttaaccctgtcatagaatctcttggcctctatgatatgggttcttcacaagc |
11301172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 308
Target Start/End: Complemental strand, 10153104 - 10152818
Alignment:
| Q |
22 |
attccagtgattgatcttgagaaaatttcagagcaactcgagtgcaaaaagttaagagatacatgtgaaagatggggttgtttcagaatcattaaccatt |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||| ||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||| | |
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| T |
10153104 |
attccagtgattgatcttgagaagatttcagagcaatccgaatgccaaaaactaagagaagcatgtgaaagatggggttgtttcagaatcatcaaccact |
10153005 |
T |
|
| Q |
122 |
ctattcctttgtcccttatggctgagatgaaaatggtcattgaagctcttcatgaccttcctacagatataaagaaaaacaacaaagatgccattcctgg |
221 |
Q |
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||||||||| |||||||| |||| ||||| || || || ||||||||| ||| ||||||| ||||| ||||||||||||||||||| |||| |||| |
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| T |
10153004 |
ctattccttccacccttatgtctgatatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctgg |
10152905 |
T |
|
| Q |
222 |
aagtggttaccttgcaccaagtgcttttaaccctctcttacaatctttcggcctctatgatatgggttcttcacaagccatgcatga |
308 |
Q |
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||||||||| | |||||||||||| | || ||||||| || |||| |||||||||||| | |||||||||||||| ||||||| |
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| T |
10152904 |
tagtggttacatggcaccaagtgctgtcaatcctctctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatga |
10152818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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