View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9691_low_15 (Length: 280)
Name: NF9691_low_15
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 48271626 - 48271361
Alignment:
| Q |
1 |
tacacattctaataaatgtatgcacacattacctctcactcttttgcaatgcagttctgagagaaccattagtcatatactcagttactgttgccacaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48271626 |
tacacattctaataaatgtatgcacacattacctctcactcttttgcaatgcagtccggagagaaccattagtcatatactcagttactgttgccacaga |
48271527 |
T |
|
| Q |
101 |
atctcctgggccatcaagtacaacaccgtagaaagcaaccacatttggatggtgcaagtcagcaagcttgattgcctcattccagaagtcatctctctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48271526 |
atctcctgggccatcaagtacaacaccgtagaaagcaaccacatttggatggtgcaagtcagcaagcttgattgcctcattccagaagtcatctctctat |
48271427 |
T |
|
| Q |
201 |
ttgatgcataaatagagaatcaatgtaagttagtttctcgatcactgacgagagaaggaaaaaatg |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48271426 |
ttgatgcataaatagagaatcaacgtaagttagtttctcgatcactgacgagagaaggaaaaaatg |
48271361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 25243250 - 25243093
Alignment:
| Q |
55 |
ttctgagagaaccattagtcatatactcagttactgttgccacagaatctcctgggccatcaagtacaacaccgtagaaagcaaccacatttggatggtg |
154 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
25243250 |
ttcttagagaaccattaaccatatactctgttactgttgccacagaccctcctgggccatcaagaacaacaccataaaaagctaccacgtttgggtggtg |
25243151 |
T |
|
| Q |
155 |
caagtcagcaagcttgattgcctcattccagaagtcatctctctatttgatgcataaa |
212 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||| |
|
|
| T |
25243150 |
caagtcagcaagcttgattgcttcattccaaaaatcagctctctgcttgatgcataaa |
25243093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University