View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9691_low_17 (Length: 250)

Name: NF9691_low_17
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9691_low_17
NF9691_low_17
[»] chr6 (11 HSPs)
chr6 (1-89)||(10080011-10080099)
chr6 (1-89)||(10084207-10084295)
chr6 (161-243)||(10084059-10084140)
chr6 (161-243)||(10096514-10096596)
chr6 (3-89)||(10096664-10096751)
chr6 (161-242)||(10079861-10079941)
chr6 (164-219)||(10086434-10086489)
chr6 (171-243)||(10103911-10103979)
chr6 (27-82)||(10261268-10261322)
chr6 (34-84)||(10075597-10075647)
chr6 (171-219)||(10090473-10090521)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 10080099 - 10080011
Alignment:
Q  1 tgtgatttagccattaaattcaacggttgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttgaccttttggtg 89  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10080099 tgtgatttagccattaaatccaacggttgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttgaccttttggtg 10080011  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 10084295 - 10084207
Alignment:
Q  1 tgtgatttagccattaaattcaacggttgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttgaccttttggtg 89  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10084295 tgtgatttagccattaaatccaacgggtgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttgaccttttggtg 10084207  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 10084140 - 10084059
Alignment:
Q  161 ttgcatgtttcttgtctataaattgagtcagtcacaactcaaattttccattcattcatccactcctcctctcttctctgctt 243  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10084140 ttgcatgttt-ttgtctataaattgagtcagtcacaactcaaattttccattcattcatccactcctcctctcttctttgctt 10084059  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 10096596 - 10096514
Alignment:
Q  161 ttgcatgtttcttgtctataaattgagtcagtcacaactcaaattttccattcattcatccactcctcctctcttctctgctt 243  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  10096596 ttgcatgtttcttgtctataaattcagtcagttacaactcacattttccattcattcatccactcctcctctcttctttgctt 10096514  T

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Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 10096751 - 10096664
Alignment:
Q  3 tgatttagccattaaattcaacggttgtaccctctttagcatgtgaagtaagaaaaaa--gatggataaagatttttgaccttttggtg 89  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  10096751 tgatttagccattaaatccaacggttgtacc-tctttggcatgtgaagtaagaaaaaaaagatggataaaggtttttgaccttttggtg 10096664  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 10079941 - 10079861
Alignment:
Q  161 ttgcatgtttcttgtctataaattgagtcagtcacaactcaaattttccattcattcatccactcctcctctcttctctgct 242  Q
    |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| || | ||||||||||| ||||    
T  10079941 ttgcatgttt-ttgtctataaattgagtcagtcacaacccacattttccattcattcatctacccttcctctcttctttgct 10079861  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 10086489 - 10086434
Alignment:
Q  164 catgtttcttgtctataaattgagtcagtcacaactcaaattttccattcattcat 219  Q
    ||||||||||||||||||||||||||| ||||||  |  | |||||||||||||||    
T  10086489 catgtttcttgtctataaattgagtcactcacaatcctcactttccattcattcat 10086434  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 10103979 - 10103911
Alignment:
Q  171 cttgtctataaattgagtcagtcacaactcaaattttccattcattcatccactcctcctctcttctctgctt 243  Q
    |||||||||||||||||||| ||||||| |  | |||||||||||||||    |||||||||||||| |||||    
T  10103979 cttgtctataaattgagtcactcacaaccctcactttccattcattcat----tcctcctctcttctttgctt 10103911  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 10261268 - 10261322
Alignment:
Q  27 ttgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttgacct 82  Q
    ||||||||||||| || |||||||||| ||||||||| | ||||||||||||||||    
T  10261268 ttgtaccctctttggcgtgtgaagtaa-aaaaaagattgttaaagatttttgacct 10261322  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 10075647 - 10075597
Alignment:
Q  34 ctctttagcatgtgaagtaagaaaaaagatggataaagatttttgaccttt 84  Q
    |||||| || ||||||||| ||||||||||| |||||| ||||||||||||    
T  10075647 ctctttggcgtgtgaagtaggaaaaaagatgcataaagttttttgaccttt 10075597  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 10090521 - 10090473
Alignment:
Q  171 cttgtctataaattgagtcagtcacaactcaaattttccattcattcat 219  Q
    |||||||||||||||||||| ||||||| |  ||||||| |||||||||    
T  10090521 cttgtctataaattgagtcattcacaaccctcattttcccttcattcat 10090473  T

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