View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9691_low_18 (Length: 250)
Name: NF9691_low_18
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 11491067 - 11490819
Alignment:
| Q |
1 |
ctataaatgtgcttttttattaatgtattgtaaaatacatatcgattggtagctacaaggatgttgatctacatgttgtacgaatcgagaattttccact |
100 |
Q |
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| T |
11491067 |
ctataaatgtgtttttttattaatgtattgtaaaatacatatcgattggtagctacaaggatgttgatctacatgttgtacgaatcgagaattttccact |
11490968 |
T |
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| Q |
101 |
tctcttgtctaaaataaaaatataatacttcatctaataacttaaattgaaaagaatatatttaa-----cttccaagaatagattgaatacttacttgt |
195 |
Q |
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| T |
11490967 |
tctcttgtctaaaataaaaatataatacttcatctaataacttaaattgaaaagaatatatttaacttagcttccaagaatagattgaatacttacttgt |
11490868 |
T |
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| Q |
196 |
gttcaccttccgtccaatgtaccctttccctacgccctctctctgcttc |
244 |
Q |
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| T |
11490867 |
gttcaccttccgtccaatgtaccctttccctacgccctctctttgcttc |
11490819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 11483391 - 11483301
Alignment:
| Q |
156 |
atatatttaacttccaagaatagattgaata--cttacttgtgttcaccttccgtccaatgtaccctttccctacgccctctctctgcttc |
244 |
Q |
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|||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
11483391 |
atatatataacttccaaggatagattgaatatacttacttatgttcaccttccgtccaatgtaccctttccttacgccctctctttgcttc |
11483301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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