View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9691_low_2 (Length: 573)
Name: NF9691_low_2
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 13 - 554
Target Start/End: Original strand, 44133590 - 44134133
Alignment:
| Q |
13 |
tttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcatgtat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44133590 |
tttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtatcgctatatgaggtgcttatttattttattttcatgtat |
44133689 |
T |
|
| Q |
113 |
caccttcaaatttgcttgatttttatgtaaggatgaataacctgtctacattcaacatgtaacataatattaaaagtaatataattt-gtgatttgtttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44133690 |
caccttcaaatttgcttgatttttatgtaaggatgaataacctgtctacattcaacatgtaacataatattaaaagtaatataatttagtgatttgtttt |
44133789 |
T |
|
| Q |
212 |
atattctgctccagttatttatttgatatatcatttataatgataattaggaagtaaattgtgtcaatatataaatgactgtaaattagatgactgttac |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
44133790 |
atattctgctccagttatttatttgatatatcatttataatgataattaagaagtaaatcgtgtcaacatataattgactgtaaattagatgactgttac |
44133889 |
T |
|
| Q |
312 |
aagtgaatgataaaagtagtaatgtaatgccttctaacttatagtatttgaaactaattttaattatctgtacactatactatgttttattttgcaacaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44133890 |
aagtgaatgataaaagtagtaatgtaatgtcttctaacttatagtatttgaaactaattttaattatctgtacactatactatgttttattttgcaacaa |
44133989 |
T |
|
| Q |
412 |
caaaagattttattactctaaacagagacaatccagtagcaatgtagcataaggtgtacttggtgagcaaaaaaccaagtacaaagattcacaacagaat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44133990 |
caaaagattttattactctaaacagagacaatccagtagcaatgtagcataaggtgtacttggtgagcaaaaaaccaagtacaaagattcacaacagaat |
44134089 |
T |
|
| Q |
512 |
agaacagcc-nnnnnnnnctaggtccaaacacaccactgcctgc |
554 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44134090 |
agaacagccaaaaaaaaactaggtccaaacacaccactgcctgc |
44134133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 518
Target Start/End: Original strand, 44129388 - 44129896
Alignment:
| Q |
16 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcatgtatcac |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44129388 |
ggtgttttatttggctttggaccaggtcttactattgaaactgttgttttgcgcagtgtcgctatatgaggtgcttaattattttattttcatgaatcac |
44129487 |
T |
|
| Q |
116 |
cttcaaatttgcttgatttttatgtaaggatgaataacctgtctacattcaacatgtaacataatattaaaagtaatataatttgtgatttgttttatat |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |
|
|
| T |
44129488 |
tttcaaatttgcttgattttt-tgtaaggatgaataacctgtctacattcaacatgtaatatcatattaaaagtaatataatttgtgatttgttttagat |
44129586 |
T |
|
| Q |
216 |
tctgctccagttatttatttgatatatcatttataatgataattaggaagtaaattgtgtcaatatataaatgactgtaaattagatgactgttacaagt |
315 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44129587 |
tctactccagttatttatttgatatatcatttataatgataattaagaagtaaattgtgttaacatataaatgactgtaaattggatgactgttacaagt |
44129686 |
T |
|
| Q |
316 |
gaatgataaaagt--agtaatgtaatg-------ccttctaactt-atagtatttgaaactaattttaattatctgtacactatactatgttttattttg |
405 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
44129687 |
gaatttaaaaagtcctgtaatgtaatgtgtgcactcttctaacttaatagtatttgaaactaattttaaatatctgtacactgtactatgttttattttg |
44129786 |
T |
|
| Q |
406 |
caacaacaaaagattttattactctaaacagagacaatccagtagcaatgtagcataaggtgtacttggtgagcaaaaaaccaagtacaaagattcacaa |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| || ||||||||| ||||||| | ||| |
|
|
| T |
44129787 |
aaacaacaaaagattttattactctaaacagaaacaatccaatagcaatgtagcataaggtgtactttgtg---aacaaaccaagtgcaaagatacgcaa |
44129883 |
T |
|
| Q |
506 |
cagaatagaacag |
518 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
44129884 |
caaaatagaacag |
44129896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 10 - 518
Target Start/End: Original strand, 44142009 - 44142521
Alignment:
| Q |
10 |
gagtttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcatg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || || |
|
|
| T |
44142009 |
gagtttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttacgcagtgtcgctatatgaggtgcttaattattttattatcttg |
44142108 |
T |
|
| Q |
110 |
tatcaccttcaaatttgcttgatttttatgtaaggatgaataacctgtctaca-ttcaacatgtaacataatattaaaagtaatataatttgtgatttgt |
208 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||| ||| |||||| | ||||||||||| ||| ||||||||| ||| |||||||| || |
|
|
| T |
44142109 |
tatcactttcaaattttcttgatttttatgtaaggttgaaaaacttgtctagagttcaacatgtaccatcatattaaaaataa------ttgtgattagt |
44142202 |
T |
|
| Q |
209 |
tttatattctgctccagttatttatttg----atatatcatttataatgat-aattaggaagtaaattgtgtcaatatataaatgactgtaaattagatg |
303 |
Q |
| |
|
|||| | ||| | ||||||||||||| || |||||||||||||||| ||||| |||| ||||||||| | ||||||| ||| ||||||||||| |
|
|
| T |
44142203 |
tttaaactct-atatagttatttatttgaaaaatgtatcatttataatgataaattaagaagaaaattgtgttgacatataaa-gacaataaattagatg |
44142300 |
T |
|
| Q |
304 |
actgttacaagtgaatgat------aaaagtagtaatgtaa----tgc---cttctaacttatagtatttgaaactaattttaattatctgtacactata |
390 |
Q |
| |
|
| ||||||| ||||| || ||| ||||||||| || ||| |||| |||| |||||||||||||||||||||| |||||| || |
|
|
| T |
44142301 |
attgttacagatgaattatattttaaaatgtagtaatgcaatttgtgcactcttcgaactcttagtatttgaaactaattttaaatatctg-------ta |
44142393 |
T |
|
| Q |
391 |
ctatgttttattttgcaacaacaaaag---attttattactctaaacagagacaatccagtagcaatgtagcataaggtgtacttggtgagcaaaaaacc |
487 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
44142394 |
ctatgttccattttgcaacaacaaaagataattttattactctaaacagagacaatccagtagcaatgtagcataaggtgtactttgtg---aacaaacc |
44142490 |
T |
|
| Q |
488 |
aagtacaaagattcacaacagaatagaacag |
518 |
Q |
| |
|
|||| ||||||| | ||||| |||||||||| |
|
|
| T |
44142491 |
aagtgcaaagatacgcaacaaaatagaacag |
44142521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 1505791 - 1505963
Alignment:
| Q |
16 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcatgtatcac |
115 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
1505791 |
ggtgtgttatttggctttggaccgggacttactattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcatatatcac |
1505890 |
T |
|
| Q |
116 |
cttcaaatttgcttgatttttatgtaaggatgaataacctgtctaca-ttcaacatgtaacataatattaaaa |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||| || | |||||||| || ||| ||||||||| |
|
|
| T |
1505891 |
tttcaaatttgcttgatttttatgtaaggatgaaaaacttgtgtagagttcaacatttaccatcatattaaaa |
1505963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 1492989 - 1493112
Alignment:
| Q |
23 |
tatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattat-tttattttcatgtatcaccttcaa |
121 |
Q |
| |
|
|||| ||||||||||| || ||||||||||| |||||||| ||||| ||||| ||||||| || |||||||| || ||||||| ||| |||||| || || |
|
|
| T |
1492989 |
tattcggctttggaccaggacttaccattgagactgttgtcttgcgcagtgtagctatataagatgcttaatcatatttatttccatttatcacttttaa |
1493088 |
T |
|
| Q |
122 |
atttgcttgatttttatgtaagga |
145 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
1493089 |
atttgctttatttttatgtaagga |
1493112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 1483019 - 1483099
Alignment:
| Q |
28 |
ggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcat |
108 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||||| ||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
1483019 |
ggctttggacctggacttaccattgaaaccgttgttttgcacagtgtggctatatgataagcttaattagtttattttcat |
1483099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 449
Target Start/End: Original strand, 1506557 - 1506620
Alignment:
| Q |
389 |
tactatgttttattttgcaacaacaaaag---attttattactctaaacagagacaatccagta |
449 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
1506557 |
tactatgttttgttttgcaacaacaaaagataattttattagtctaaacagagtcaatccagta |
1506620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 1500067 - 1500105
Alignment:
| Q |
29 |
gctttggaccgggtcttaccattgaaactgttgttttgc |
67 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
1500067 |
gctttggacctggacttaccattgaaactgttgttttgc |
1500105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 46706296 - 46706141
Alignment:
| Q |
16 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcatgtatcac |
115 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||| |
|
|
| T |
46706296 |
ggtgtgttatttggctttggaccaggacttaccatagaaactgttgttttgcacagtgtcgctatatgaaatgcttaattattttatttttatttatcac |
46706197 |
T |
|
| Q |
116 |
cttcaaatttgcttgatttttatgtaaggatgaataacctgtctaca-ttcaacat |
170 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
46706196 |
ttccaaatttgcttgatttttatgtaaggatgaaaaactcgtctacagttcaacat |
46706141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 5303310 - 5303443
Alignment:
| Q |
16 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcatgtatcac |
115 |
Q |
| |
|
||||| |||||||| |||||||| || ||||| |||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
5303310 |
ggtgtgttatttggttttggaccaggacttacaattgaaacggttgttttgcgcagtgtcgctatatgagatgcttaattattttgttttcatgtatcaa |
5303409 |
T |
|
| Q |
116 |
cttcaaatttgcttgatttttatgtaaggatgaa |
149 |
Q |
| |
|
|| |||||| || ||||||| ||||||||||| |
|
|
| T |
5303410 |
ttttcaatttgtttaatttttacgtaaggatgaa |
5303443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 5289005 - 5288876
Alignment:
| Q |
16 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcatgtatcac |
115 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||||||||||||||||| || ||||| || ||||||| || ||||||||||||||||||| || |
|
|
| T |
5289005 |
ggtgtcttatttggttttggaccaggacttaccattgaaactgttgttttacgtagtgtggccatatgagatgtttaattattttattttcattgat--- |
5288909 |
T |
|
| Q |
116 |
cttcaaatttgcttgatttttatgtaaggatgaa |
149 |
Q |
| |
|
|||||||||| || | ||||||||||||||||| |
|
|
| T |
5288908 |
-ttcaaatttgtttaacttttatgtaaggatgaa |
5288876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 5315925 - 5316051
Alignment:
| Q |
16 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcatgtatcac |
115 |
Q |
| |
|
||||| |||||||| |||||||| || |||||||||||||| ||||||||||| || || |||||||||| |||||| |||||||| ||||||| |
|
|
| T |
5315925 |
ggtgtattatttggttttggaccaggacttaccattgaaacggttgttttgcgcagcgtggctatatgagatgctta-----tttatttttatgtatcga |
5316019 |
T |
|
| Q |
116 |
cttcaaatttgcttgatttttatgtaaggatg |
147 |
Q |
| |
|
|||||||||| || |||||||||||| |||| |
|
|
| T |
5316020 |
tttcaaatttgtttaatttttatgtaatgatg |
5316051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 5285122 - 5285206
Alignment:
| Q |
16 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattatttt |
100 |
Q |
| |
|
||||| |||||||| |||||||| || |||||||||||||| ||||||||||| ||||| || ||||||| ||||||||| |||| |
|
|
| T |
5285122 |
ggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgagatgcttaattttttt |
5285206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 5311211 - 5311307
Alignment:
| Q |
16 |
ggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtgtcgctatatgaggtgcttaattattttattttcatgtatc |
113 |
Q |
| |
|
||||| |||||||| |||||||| || |||||||||||||| ||||||||||| ||||| | ||||||| || |||| |||||||||||||| |||| |
|
|
| T |
5311211 |
ggtgtattatttggttttggaccaggacttaccattgaaacagttgttttgcgtagtgtgaccatatgagatgtttaa-tattttattttcatttatc |
5311307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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