View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9691_low_21 (Length: 242)
Name: NF9691_low_21
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 10084527 - 10084314
Alignment:
| Q |
15 |
tcatgatctagttagagcggctatatatatggttaatcattaagtcctaaacttgatgccaaattgtattgttgatgttattgcaaatgatat------- |
107 |
Q |
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| T |
10084527 |
tcatgatctagttagagcggctatatatatggttaatcattaagtcctaaacttgatgccaaattgtattgttgatgttattgcaaatgatatgagatac |
10084428 |
T |
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| Q |
108 |
aatgaagaaatgtaactttgaatattatgagaatgaggaggaattattagcatttaattagcaatccgtaataatcttcaaaagcaagcaatcaagtagt |
207 |
Q |
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| T |
10084427 |
aatgaagaaatgtaactttgaatattatgagaatgaggaggaattattagcatttaattagcaatccgtaataatcttcaaaagcaagcaatcaagtagt |
10084328 |
T |
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| Q |
208 |
agtttacactactt |
221 |
Q |
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|||||||||||||| |
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| T |
10084327 |
agtttacactactt |
10084314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 10080451 - 10080250
Alignment:
| Q |
18 |
tgatctagttagagcggctatatatatggttaatcattaagtcctaaacttgatgccaaattgtattgttgatgttattgcaaatgatat-------aat |
110 |
Q |
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||||||| |||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||| | |||||||| ||| |
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| T |
10080451 |
tgatctaattagggcagctatatatatggttaatcattaagtcctcaatttgatgccaaattgtattgttgatgctattacgaatgatatgagataaaat |
10080352 |
T |
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| Q |
111 |
gaagaaatgtaactttgaatattatgagaatg-aggaggaattattagcatttaattagcaatccgtaat-aatcttcaaaagcaagcaatcaagtagta |
208 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| ||| |||| ||||| ||||||| |||||||||||||| |
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| T |
10080351 |
gaagaaatgtaactttgaatattatgagaatgaagaaggaattcttagcatttaattagcagtccataataaatctccaaaagc--gcaatcaagtagta |
10080254 |
T |
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| Q |
209 |
gttt |
212 |
Q |
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|||| |
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| T |
10080253 |
gttt |
10080250 |
T |
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