View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9691_low_29 (Length: 205)
Name: NF9691_low_29
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 2337329 - 2337159
Alignment:
| Q |
20 |
ctacccactatatcattcgttctctgaaagtactcatcatgattaccaagggcttcaacaatgtgaagggacacatgtcttcacatacagaacctttgtc |
119 |
Q |
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| T |
2337329 |
ctacccactatatcattcgttttctgaaagtactcatcatgattaccaagggcttcaacgatgtgaaggaacacatgtcttcacatacataacctttgtc |
2337230 |
T |
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| Q |
120 |
aaaattgagcctccgtgtatacaggattttcagagaagtagtcatttgaacaatcgattatacccttcttc |
190 |
Q |
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| T |
2337229 |
aaaattgagcctccgtgtatacaggattttcagagaagtagtcatttgaacaatcggttatgcccttcttc |
2337159 |
T |
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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 29264848 - 29264998
Alignment:
| Q |
39 |
ttctctgaaagtactcatcatgattaccaagggcttcaacaatgtgaagggacacatgtcttcacatacagaacctttgtcaaaattgagcctccgtgta |
138 |
Q |
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| T |
29264848 |
ttctttgaaagtactcatcatgattaccaagggcttcatcgatgcgaaggaacacatgtcttcgcatacggaaccttcgtcgaaattgagcctctgtgta |
29264947 |
T |
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| Q |
139 |
tacaggattttcagagaagtagtcatttgaacaatcgattatacccttcttc |
190 |
Q |
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| T |
29264948 |
tacaggattttcagagaagtagtca-ttaaacaattggttatgcccttcttc |
29264998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 26676010 - 26676109
Alignment:
| Q |
90 |
acacatgtcttcacatacagaacctttgtcaaaattgagcctccgtgtatacaggattttcagagaagtagtcatttgaacaatcgattatacccttctt |
189 |
Q |
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| T |
26676010 |
acacatgtctttgcattcggaacctttgtcgaaattgagcttgtgtgtatactggattttcagagaaatactca-ttaaacaatcgattattcccttctt |
26676108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 19731293 - 19731352
Alignment:
| Q |
107 |
cagaacctttgtcaaaattgagcctccgtgtatacaggattttcagagaagtagtcattt |
166 |
Q |
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| T |
19731293 |
cagaaccttcgtccaaattgagcatctgtgtatactggattttcatagaagtagtcattt |
19731352 |
T |
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