View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9691_low_3 (Length: 567)
Name: NF9691_low_3
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 221 - 548
Target Start/End: Original strand, 14599032 - 14599359
Alignment:
| Q |
221 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggcttccagggtttctcggaaccatcaaatactccttcatttagaccagcctcatcat |
320 |
Q |
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| T |
14599032 |
ggagttatgatgccatttggaattggtgttcttctacacaaaggcttccaaggtttctcggaaccatcaaatactccttcatttagaccagcctcatcat |
14599131 |
T |
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| Q |
321 |
ctgaatcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttctttg |
420 |
Q |
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| T |
14599132 |
ctgaatcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttctttt |
14599231 |
T |
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| Q |
421 |
ggaaccgtttggtccttgtaattgcaatgctccatttgaataatcctggccatcgttctcgtattctcctactttgtatggctccttacatccaggacac |
520 |
Q |
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| T |
14599232 |
ggaaccgtttggtccttgtaattgcaatgctccatttgaataatcctggccatcgttctcgtattctcctactttgaatggctccttacatccgggacac |
14599331 |
T |
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| Q |
521 |
gtgccggtttctttctgcgcatctataa |
548 |
Q |
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| T |
14599332 |
gtgccggtttctttctgcgcatctataa |
14599359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 225 - 417
Target Start/End: Complemental strand, 14609478 - 14609286
Alignment:
| Q |
225 |
ttatgatgccatttggaattggtgttcttctacacaaaggcttccagggtttctcggaaccatcaaatactccttcatttagaccagcctcatcatctga |
324 |
Q |
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| T |
14609478 |
ttatgatgccatttggaactgatctttttcggcacaaaggcttccaaggcttctcagaagaatcaaatactccttgatgcataccatcacctccattttc |
14609379 |
T |
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| Q |
325 |
atcatctggaggccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttct |
417 |
Q |
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| T |
14609378 |
atcgtctggaggccaatatgcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaattctccattttgatttct |
14609286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 14598827 - 14598862
Alignment:
| Q |
16 |
acatcactactaagcgaatagcaataagagccctgt |
51 |
Q |
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| T |
14598827 |
acatcactaccaagcgaatagcaataagagccctgt |
14598862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 15420556 - 15420619
Alignment:
| Q |
336 |
gccaataagcattgccaactccataggtacctttggtctcaaacaaccatttattgtgatcaaa |
399 |
Q |
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| T |
15420556 |
gccaaaaagcatttccaattccataggttcctttagtctcaaacaaccatctattatgatcaaa |
15420619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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