View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9691_low_4 (Length: 476)
Name: NF9691_low_4
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 4083095 - 4082634
Alignment:
| Q |
1 |
gtgttgtagggggcggcgtcaattttcttcttcgaaatcgaacactacatagagttgtgattatggcaatgcttgttgctaatcctattagggagaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4083095 |
gtgttgtagggggcggcgtcaattttcttcttcgaaatcgaacactacatagagttgtgattatggcaatgcttgttgctaatcctattagggagaatga |
4082996 |
T |
|
| Q |
101 |
aaaatatagaaatggacctatcaatgaattattggcattgtcatagggcaatcttcttcccatgacaaaagatattatctatgtaagtgatttctattgc |
200 |
Q |
| |
|
||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4082995 |
aaaatttagaaatggacctattaataaattgttggcattgtcatagggcaatcttcttcccatgacaaaagatattatcgatgtaagtgatttctattgc |
4082896 |
T |
|
| Q |
201 |
tgacaatttgttctatgttctttgtcttgttcttgctatttaatggttttgtttcttggcaaatgatgattgaagggtgtctggggaattcaaattccta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4082895 |
tgacaatttgttctatgttctttgtcttgttcctgcgatttaatggttttgtttcttggcaaatgatgattgaagggtgtctggggaattgaaattccta |
4082796 |
T |
|
| Q |
301 |
tagaaatat--atatggttttgggaaatgatcaaatggaaannnnnnnnnnnnnnnnnnnnnnnnnaagaaaaccgtatatggttgctcaaattttggag |
398 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4082795 |
tagaaatatatatatagttttgggaaatgatcaaatggaaattttgttttttggtttggtttgttgaagaaaaccgtatatggttgctcaaattttggag |
4082696 |
T |
|
| Q |
399 |
ttgtagggaaggaaacatgtaggggaaagagagagtctaaacttggaaaatttagttgatag |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4082695 |
ttgtagggaaggaaacatgtaggggaaagagagagtctaaacttggaaaatttagttgatag |
4082634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 48203029 - 48203072
Alignment:
| Q |
28 |
ttcttcgaaatcgaacactacatagagttgtgattatggcaatg |
71 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
48203029 |
ttcttcggaatcgaaaactacatatagttgtgattatggcaatg |
48203072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University