View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9691_low_6 (Length: 418)
Name: NF9691_low_6
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 34296245 - 34295861
Alignment:
| Q |
13 |
taggttggtgtaattatgaattttttaaaggtatagctatttcccaaaaagtatgtttttccctttattcaaaaaatggcatccttaacagaagcaattg |
112 |
Q |
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| T |
34296245 |
taggttggtgtaattatgaattttttaaaggtatagctttttcccaaaaagtatgtttttccctttattcaaa---tggcatccttaacagaagcaat-g |
34296150 |
T |
|
| Q |
113 |
tttgatagctactgcttattccttaagttactatgttatgtattcacatgtatcactggtttttcagggaaaagaattgtattattttctttccacacat |
212 |
Q |
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| T |
34296149 |
tttgatagctactgcttattccttaagttactatgttatgtattcacatgtatcactggtttttcagggaaaataattgtattattttctttccacacat |
34296050 |
T |
|
| Q |
213 |
ttcatttttaatggttgtatagaatctgtaaatctgtaaattcgtctttcttttggtattttatatacttttcttgactgatgctttcatcaatttgttt |
312 |
Q |
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| T |
34296049 |
ttcatttttaatggttgtatagaatctgtaaatctctaaattcgtctttcttttggtattttatatacttttcttgactgatgctttcatcaatttgttt |
34295950 |
T |
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| Q |
313 |
cttatctatactatacatcttagatttattatatttataaaaactggaaattatgagaattgttttggtatgtctgttggttttgtatt |
401 |
Q |
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| T |
34295949 |
cttatctatactatacatcttagatttattatatttataaaaactggaaattatgagaattgttttggtatgtgcgttggttttgtatt |
34295861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 34559196 - 34559159
Alignment:
| Q |
169 |
tggtttttcagggaaaagaattgtattattttctttcc |
206 |
Q |
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| T |
34559196 |
tggtttttcagggaaaagaattgtattcttttctttcc |
34559159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 123503 - 123568
Alignment:
| Q |
181 |
gaaaagaattgtattattttctttccaca--catttcatttttaatggttgtatagaatctgtaaa |
244 |
Q |
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| T |
123503 |
gaaaagaattgtattcttttctttccacatgcatgtcatttctaatagctgtatagaatctctaaa |
123568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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