View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9691_low_7 (Length: 404)
Name: NF9691_low_7
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 25952312 - 25952644
Alignment:
| Q |
1 |
aagctaaataatcttgcaatgtttcaaatcatctgttatagctaaggtctttagaaagagtgaaacatattaattatttatgttgatcttataagtggaa |
100 |
Q |
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| T |
25952312 |
aagctaaataatctggcaatgtttcaaatcatctgttatagctagggtctttagaaagagtgaaacatattaattatttatgttgatcttataagtggaa |
25952411 |
T |
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| Q |
101 |
gtagattttgaaattaacattgaatttgaatagcttaacttgtaatcatttttaatatttgcttcgctatcgaattattcttttagagatgtcatggata |
200 |
Q |
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| T |
25952412 |
gtagattttgaaattaacattgaatttgaatagcttcacttataatcattttttatatttgcttcgctatcgaattattcttttagagatgtcatggata |
25952511 |
T |
|
| Q |
201 |
gggatgctcttttgatatacatgtgtgagaaaagcagatctacaagtgattcttccccaaatgttaacaattgcctttcgttgaaggagatactcgaaat |
300 |
Q |
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| T |
25952512 |
gggatgctcttttgatatacatgtgtgagaaaagcagatctacaagtgattttgccccaaatgttaacaattgcctttcgttgaaggagatactcgaaat |
25952611 |
T |
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| Q |
301 |
tttgatatcgatgaagagattgattccaaagtt |
333 |
Q |
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| T |
25952612 |
tttgatatcgatgaagagattgattcgaaagtt |
25952644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 25952742 - 25952802
Alignment:
| Q |
328 |
aaagttcccgcgaatatgcttttagagcaacaaaaatttcggtattatatagatgtatttt |
388 |
Q |
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| T |
25952742 |
aaagttctcgcgaatatgcttttagagcaacaaaaatttcggtattatatagatgtatttt |
25952802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 25938652 - 25938740
Alignment:
| Q |
180 |
cttttagagatgtcatggatagggatgctcttttgatatacatgtgtgagaaaagcagatctacaagtgattcttccccaaatgttaac |
268 |
Q |
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||||||| ||| |||||||||||||||| |||||| |||| | ||||||||||||||| || ||||| ||||| || ||||| ||||| |
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| T |
25938652 |
cttttagtgatatcatggatagggatgcgcttttggcatacctatgtgagaaaagcagacctccaagttattctacctcaaatattaac |
25938740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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