View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9691_low_8 (Length: 388)
Name: NF9691_low_8
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 45213134 - 45213356
Alignment:
| Q |
18 |
atgttgagctattgatatgaaaacttcatgtaagaaatcttgtggacttcgaccccacatttttccacttaattatattgatgatgatgattgtctcgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45213134 |
atgttgagctattgatatgaaaacttcatgtaagaaatcttgtggacttcgaccccacatttttccacttaattatattgatgatgatgattgtctcgag |
45213233 |
T |
|
| Q |
118 |
ttttaaataactagggatatttttgtaataaaatatatctagtaaatttgtaaaagagttggttaataaaaagggacaaattttgaaaacgagcttatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45213234 |
ttttaaataactagggatatttttgtaataaaatatatctagtaaatttgtaaaagagttagttaataaaaagggacaaattttgaaaacgagcttatat |
45213333 |
T |
|
| Q |
218 |
ttaagtgatgtagttataattaa |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
45213334 |
ttaagtgatgtagttataattaa |
45213356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 239 - 377
Target Start/End: Complemental strand, 4433985 - 4433847
Alignment:
| Q |
239 |
aagaggattgctacaccgcacgacaatattagcacacgaatttgcacgacaagacaaattcatgtggttatcttctcttttaacggtgctagtttataat |
338 |
Q |
| |
|
||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
4433985 |
aagaggattgctataccgcacgactgtgttagcacacgaatttgcacgacaagacaaattcatgtggctatcttctcttttaacggtgctagcttataat |
4433886 |
T |
|
| Q |
339 |
atattaaaataaaagaagaatctagttattatgtaaaca |
377 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
4433885 |
attttataataaaagaagaatctagttattatataaaca |
4433847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 11829371 - 11829277
Alignment:
| Q |
282 |
gcacgacaagacaaattcatgtggttatcttctcttttaacggtgctagtttataatatattaaaataaaagaagaatctagttattatgtaaac |
376 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
11829371 |
gcacgacaagaaaaattcatgcggttatcttctcttttaacggtgctagtttataatattttaaaataaaagaaggatctagttattatataaac |
11829277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University