View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9691_low_9 (Length: 380)
Name: NF9691_low_9
Description: NF9691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9691_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 43553469 - 43553118
Alignment:
| Q |
11 |
cagagatgtcaacagtcaactaaataaagtaaacaaatattagtcgtggtttgggcatatatactaaccttcacattttccttccccgatggaatcttaa |
110 |
Q |
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| T |
43553469 |
cagagatgtcaaccgtcaactaaataaagtaaacaaatattagtcgtggtttgggcatatatactaaccttcacattttccttccccgatggaatcttaa |
43553370 |
T |
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| Q |
111 |
acctcggctttttagcagcaaatacttcatcaagccgtgtgtcattgtatctcggagccctaaacaatcctggttttttaaatctattatccacctcaat |
210 |
Q |
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| T |
43553369 |
acctcggctttttagcagcaaatacttcatcaagccgtgtgtcattgtatctcggagccctaaacaatcctggttttttaaatctattatccacctcaat |
43553270 |
T |
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| Q |
211 |
ggcactgcaaagtgcaaacgtaaataaataagtaaattatcagcaaattgaaacaattaattaagaagcagaagaagaaactaactttgtggatccactg |
310 |
Q |
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| T |
43553269 |
ggcactgcaaagtgcaaacataaataaataagtaaattctcagcaaattgaaacaattaattaagaagcagaagaagaaactaactttgtggatccactg |
43553170 |
T |
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| Q |
311 |
gattgagaacattcatcagtgaggtccacgacactttcccgcttcaattgct |
362 |
Q |
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| T |
43553169 |
gattgagaacattcatcagtgaggtccacgacactttcccgcttcaattgct |
43553118 |
T |
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