View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9692_high_8 (Length: 254)
Name: NF9692_high_8
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 55102618 - 55102801
Alignment:
| Q |
63 |
tgatgtcttgatattcgtgatttttctatcgtgtcatatagtactgctgtctgccgttaatcagatatagtgagtcataacaatgtttatataaaagtga |
162 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55102618 |
tgatttcttgatattcgtgatttttctatcgtgtcatatagtactgctgtctgccgttaatcagatatagtgagtcataacaatgtttatataaaagtgg |
55102717 |
T |
|
| Q |
163 |
taattaacacagttaatagaaaacattgatgtgtgcctaataac---------ttaatagaaaatattgtgatttcccttcaaa |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55102718 |
taattaacacagttaatagaaaacattgatgtgtgcctaataactgaacacagttaatagaaaatattgtgatttcccttcaaa |
55102801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 55102436 - 55102504
Alignment:
| Q |
1 |
cagttctcagtaagttacccaactcaaattctcttaaaaataattaaacaaagggcattgtttgatgtc |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55102436 |
cagttctcagtaagttacccaactcaaattctcttaaaaataattaaacaaagggcattgtttgatgtc |
55102504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University