View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9692_low_1 (Length: 672)
Name: NF9692_low_1
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_1 |
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| [»] chr2 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 596; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Original strand, 42205229 - 42205891
Alignment:
| Q |
18 |
gattgcagttgtaaatgatcgtggttttatcgaacttatgtgattccgcacatgtaacataacaatatatttaatgtctttggaaatgatcttatagatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205229 |
gattgcagttgtaaatgatcgtggttttatcgaacttatgtgattccgcacatgtaacgtaacaatatatttaatgtctttggaaatgatcttatagatt |
42205328 |
T |
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| Q |
118 |
tatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctcatcttacgcaaatctactgaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205329 |
tatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctcatcttacgcaaatctactgaga |
42205428 |
T |
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| Q |
218 |
attgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttatttggtaccaagttttaagtacaaaaagtatcacatataagat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205429 |
attgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttatttggtaccaagttttaagtacaaaaagtatcacatataagat |
42205528 |
T |
|
| Q |
318 |
aggatatgatatgtgatcaatcagaaatatgtgtaaataaatagataataaaaccttaattaggtgaatttgtaacacgatgatatccatttcacactga |
417 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205529 |
aggatatgatatgtgatcaatcagaaatatgtgtgaataaatagataataaaaccttaattaggtgaatttgtaacacgatgatatccatttcacactga |
42205628 |
T |
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| Q |
418 |
attcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttgattgattattttttctagttgtgatatgatatcttaatccaacc |
517 |
Q |
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| T |
42205629 |
attcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttgattgattattttttctagttgtgatatgatatcttaatccaacc |
42205728 |
T |
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| Q |
518 |
tatcctatacttcacagttagttccctgnnnnnnnaattattattctatatgaagcacctttactccttggattaggcgtgttcggtg-------catat |
610 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42205729 |
tatcctatacttcacagttagttccctgcttttttaattattattctatatgaagcacctttactccttggattaggcgtgttcggtgtcagatacatat |
42205828 |
T |
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| Q |
611 |
cgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggt |
672 |
Q |
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| T |
42205829 |
cgtgtccggcaccgacacatatgattattttcaattaagtcattttctcaaattattattggt |
42205891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 49 - 542
Target Start/End: Original strand, 42212445 - 42212943
Alignment:
| Q |
49 |
gaacttatgtgattccgcacatgtaacataacaatatatttaatgtctttggaaatgatc----ttatagatttatgaataagaacttggaattttgtta |
144 |
Q |
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|||||||||||| |||| ||||||||| || | ||| |||| ||||||| ||||||||| ||||||||||||||| | || |||||| || |||| |
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| T |
42212445 |
gaacttatgtgaatccgaacatgtaaccgaaaactattttta-tgtctttcgaaatgatcattcttatagatttatgaaaaggactttggaactt-gtta |
42212542 |
T |
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| Q |
145 |
atttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctcatc---ttacgcaaatctactgagaattgatcatcaatttgtgaattat |
241 |
Q |
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| |||| || ||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||| |||||||||||||||||||||| | |
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| T |
42212543 |
agttgcgaaatcaattcgatgacatgaatatgttattagctcggtaagttcatctaattatgcagatctactgagtattgatcatcaatttgtgaatt-t |
42212641 |
T |
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| Q |
242 |
tttgttttgcctaagatcttaagaggaattttat---ttggtaccaagttttaagtacaaaaagtatcacatataagataggatatgatatgtgatcaat |
338 |
Q |
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||||||||| || ||| || || ||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| | | |||||| |
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| T |
42212642 |
tttgttttg-gtagaatcatacgacgaattctatttattggtacctagttttaagtacaaaaagcatcacatataagataggatatgaca--taatcaat |
42212738 |
T |
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| Q |
339 |
cagaaatatgtgtaaataaatagataataaaaccttaattaggtgaatttgtaacacga-------tgatatccatttcacactg-aattcatgtgtaat |
430 |
Q |
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| T |
42212739 |
---aaatatgtgtgaataaatagatagtaaaaac---cataggtgaatttgtaacatgatgttaattgttatccatttcacactgcaattcatgtgtaat |
42212832 |
T |
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| Q |
431 |
ttgcttgtttgatgaacatttcacagatttatttgcactttt-gattgattattttttctagttgtgatatgatatcttaatccaacctatcctatactt |
529 |
Q |
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| T |
42212833 |
ttgcttgtttgatgaacatttcacagatttatttgcacttttagattgattaatttttcccct--agctgtgctatcttaatccaacttatcctatactt |
42212930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 667
Target Start/End: Original strand, 14268735 - 14268784
Alignment:
| Q |
619 |
acaccgacacatatgat-attttcaattaagtcattttctcaaattatta |
667 |
Q |
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| T |
14268735 |
acaccgacacatatcattacgttcaattaagtcattttctcaaattatta |
14268784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 668
Target Start/End: Complemental strand, 18571040 - 18570979
Alignment:
| Q |
608 |
tatcgtgtccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattat |
668 |
Q |
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| T |
18571040 |
tatcgtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattat |
18570979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 644 - 672
Target Start/End: Original strand, 18029593 - 18029621
Alignment:
| Q |
644 |
ttaagtcattttctcaaattattattggt |
672 |
Q |
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| T |
18029593 |
ttaagtcattttctcaaattattattggt |
18029621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 616 - 668
Target Start/End: Original strand, 2525843 - 2525896
Alignment:
| Q |
616 |
ccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattat |
668 |
Q |
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||||||||||||||||||| ||| || ||||| ||||||| ||||||||||||| |
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| T |
2525843 |
ccgacaccgacacatatgattatattgaattatgtcatttgctcaaattattat |
2525896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 664
Target Start/End: Original strand, 23271985 - 23272042
Alignment:
| Q |
608 |
tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaatta |
664 |
Q |
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| T |
23271985 |
tatcgtgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta |
23272042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 668
Target Start/End: Complemental strand, 19637836 - 19637775
Alignment:
| Q |
608 |
tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattat |
668 |
Q |
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||||||||||||||||||||||||||| || || ||| | |||||||||| |||||||||| |
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| T |
19637836 |
tatcgtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattat |
19637775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 672
Target Start/End: Complemental strand, 9055631 - 9055571
Alignment:
| Q |
612 |
gtgtccgacaccgacacatatgatattttcaattaagtcattttctcaaattattattggt |
672 |
Q |
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|||| |||||||||||||||||||| ||| |||| | |||||| |||||||| ||||||| |
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| T |
9055631 |
gtgttcgacaccgacacatatgatacattctattatgccattttttcaaattactattggt |
9055571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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