View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9692_low_10 (Length: 341)
Name: NF9692_low_10
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 5730188 - 5729921
Alignment:
| Q |
19 |
atacatttcttgcttgcttggttagcctgtgcagatgcaaggtatgatgatatgcagtgactttgttcttctcatttatcagtcaaactccaattcttta |
118 |
Q |
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| T |
5730188 |
atacttttcctgcttgcttggttagcctgtgcagatggaaggtatgatgatatgcactgactttgttcttctcatttatcagtcaaactccaattcttta |
5730089 |
T |
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| Q |
119 |
tttgcagtagcttttgatgtttaatagtggattaatttaattttcattttttatcacctataaacttgagaaaataaactacaaccaaaaagacaattat |
218 |
Q |
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| T |
5730088 |
tttgcagtagcttttgatgtttaatagtggattaatttaattttcattttttatcacctataaacttgagaaaataaactgcaaccaaaaagacaattat |
5729989 |
T |
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| Q |
219 |
gtcatttcttcattatttaacattgtaacacatcaacaagttgaaggttatttttgtaaagtaaaatt |
286 |
Q |
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| T |
5729988 |
gttatttcttcattatttaacattgtaacacatcaacaagttgaaggttatttttgtaaagtaaaatt |
5729921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 5728587 - 5728554
Alignment:
| Q |
297 |
ttaaattactagtactacgttataagaccttctt |
330 |
Q |
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| T |
5728587 |
ttaaattactagtactacgtcataagaccttctt |
5728554 |
T |
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