View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9692_low_11 (Length: 336)
Name: NF9692_low_11
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 28733393 - 28733088
Alignment:
| Q |
18 |
cagattttaactgccctgcttcagctttaacggaaacaagctcggctttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgagg |
117 |
Q |
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| T |
28733393 |
cagattttagctgccctgcttcagctttaactgaaacaagctcggctttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgagg |
28733294 |
T |
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| Q |
118 |
agataaaccgactccactgaccaaatcatcctgaagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733293 |
agataaaccgactccactgaccaaatcatcctgaagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaag |
28733194 |
T |
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| Q |
218 |
gattggtaatcttctgacgcttttgcaccttctaatcggagcgtttccactgtcttatttgcagcttccaattgcatttgagttgtaccaagtgtttcca |
317 |
Q |
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| T |
28733193 |
gattggtaatcttctgacgcttttgcaccttctaatcggagcgtttccactgtcttatttgcagcttccaattgcatttgagttgtaccaactgtttcca |
28733094 |
T |
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| Q |
318 |
atgcct |
323 |
Q |
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|||||| |
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| T |
28733093 |
atgcct |
28733088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 297
Target Start/End: Complemental strand, 22110127 - 22109981
Alignment:
| Q |
151 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
250 |
Q |
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| T |
22110127 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
22110028 |
T |
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| Q |
251 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
297 |
Q |
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| T |
22110027 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
22109981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 297
Target Start/End: Original strand, 40584462 - 40584608
Alignment:
| Q |
151 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
250 |
Q |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
40584462 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
40584561 |
T |
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| Q |
251 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
297 |
Q |
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||||||| |||||||||||||||||| | | ||||||||||||||| |
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| T |
40584562 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
40584608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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