View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9692_low_12 (Length: 329)
Name: NF9692_low_12
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 100 - 318
Target Start/End: Original strand, 44802582 - 44802800
Alignment:
| Q |
100 |
tcataataaatcaggtatcaaatgttttgcactcgtcggtttcagggttatccttacagtaatcctccaaggggtcagaatccttcttcctatcccttgc |
199 |
Q |
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| T |
44802582 |
tcataataaatcaggtatcaaatgttttgcactcgtcggtttcagggttatccttacagtaatcctccaaggggtcagaatccttcttcctatcccttgc |
44802681 |
T |
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| Q |
200 |
atgactcgctgcagcactgagttcctccacttcatcccatgctgctacgcattctccactaactgggtcatcagcacacgtctcttgtgcactctttatg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44802682 |
atgactcgctgcagcactgagttcctccacttcatcccatgctgctacgcattctccactaactgggtcatcagcacacgtctcttgtgcactctttatg |
44802781 |
T |
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| Q |
300 |
ctctcttctacctcctttg |
318 |
Q |
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|||||||| |||| ||||| |
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| T |
44802782 |
ctctcttcaaccttctttg |
44802800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 44802456 - 44802561
Alignment:
| Q |
1 |
tcatttcaattcataagatgctatttatgtatgatgctaagataaacatgcatataaaaataaacacaatcaaagtgcagcagtaccactaatcaatgct |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
44802456 |
tcatttcaattgataagatgctatttatgtatgatgctaagataaacatgcatataaaaatacacacaatcaaagtgcagcagtaccattaatcaatgct |
44802555 |
T |
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| Q |
101 |
cataat |
106 |
Q |
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|||||| |
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| T |
44802556 |
cataat |
44802561 |
T |
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