View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9692_low_15 (Length: 292)
Name: NF9692_low_15
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_15 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 2007938 - 2008219
Alignment:
| Q |
1 |
ccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2007938 |
ccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgc |
2008037 |
T |
|
| Q |
101 |
tcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagataca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2008038 |
tcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagataca |
2008137 |
T |
|
| Q |
201 |
tacaaaaccgaacaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcaccagattttgtctctg |
282 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2008138 |
tacaaaaccgaacaaggttgctgtttatccaaccaggccagacactccaagccattagcatcatcaccagattttgtttctg |
2008219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 1969083 - 1968810
Alignment:
| Q |
1 |
ccttggttctctccaagaacccagat------ggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctact |
94 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1969083 |
ccttggttctctccaagaacccagatccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctact |
1968984 |
T |
|
| Q |
95 |
cggtgctcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaa |
194 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||| ||| |
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|
| T |
1968983 |
cggtgctcgcaaaacccacgagaattttttattactcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaa |
1968884 |
T |
|
| Q |
195 |
gatacatacaaaaccgaacaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacc |
268 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1968883 |
gatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcacc |
1968810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2004558 - 2004792
Alignment:
| Q |
1 |
ccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||| ||||| ||||| |
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|
| T |
2004558 |
ccttggttctctccaagaacccggatggcaaaaactgccaagtgtcagcatcattttgtgctgaaaaatatcctgcactagatgaactactacttggtgc |
2004657 |
T |
|
| Q |
101 |
tcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagataca |
200 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||| |
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|
| T |
2004658 |
tcgcaaaacccacaagaatatcttattactcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacaca |
2004757 |
T |
|
| Q |
201 |
tacaaaaccgaacaaggctgctgtttatccaacca |
235 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |
|
|
| T |
2004758 |
tacaaaactgaacaaggttgctgtttatccaacca |
2004792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 2011555 - 2011823
Alignment:
| Q |
3 |
ttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctc |
102 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||| |||| |||||||| ||||||||||||| ||||| |||||||||| ||||| ||||||| |
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|
| T |
2011555 |
ttggttctctccaaaaacccagatggtaaaaattgtaaagcatcaacatcattttgtgctgaaagatatgctgcattagatgaactactacttggtgctc |
2011654 |
T |
|
| Q |
103 |
gcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagatacata |
202 |
Q |
| |
|
||| |||||| | |||||| |||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||| || ||||| ||||| |
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|
| T |
2011655 |
gcacaacccataggaatttctgattactcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagacacata |
2011754 |
T |
|
| Q |
203 |
caaaaccgaacaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcaccaga |
271 |
Q |
| |
|
|||||| ||||||| || ||||| || ||||| | |||||||||||| ||||||||||||||| |||| |
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|
| T |
2011755 |
caaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccattagcatcatcaacaga |
2011823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 1965141 - 1964879
Alignment:
| Q |
1 |
ccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgc |
100 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| | ||||| |||| ||||||| ||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
1965141 |
ccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtgctgaaagatatgctgcactagatgaactactacttggtgc |
1965042 |
T |
|
| Q |
101 |
tcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagataca |
200 |
Q |
| |
|
|| || |||||| | |||||| |||||||||||| || |||| ||| |||| |||||||| || |||||||||||||| |||||||| ||||| ||| |
|
|
| T |
1965041 |
tcacacaacccataggaatttctgattactcaattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccactcccgaaagacaca |
1964942 |
T |
|
| Q |
201 |
tacaaaaccgaacaaggctgctgtttatccaaccaggccagacactccaagccattagcatca |
263 |
Q |
| |
|
|||||||| ||||||| || ||||| || ||||| | |||||||||||| |||||||||||| |
|
|
| T |
1964941 |
tacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccattagcatca |
1964879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 2018441 - 2018608
Alignment:
| Q |
107 |
aacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaa |
206 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| ||||| |||||| || || |||||||| || |||||||||||||| ||||||||| |
|
|
| T |
2018441 |
aacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaa |
2018540 |
T |
|
| Q |
207 |
accgaacaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcaccagattt |
274 |
Q |
| |
|
|| ||||||| |||||||| |||||||| |||||||||| ||| |||||| |||||||||| ||||| |
|
|
| T |
2018541 |
actgaacaagtttgctgtttgtccaaccatgccagacacttcaacccattatcatcatcacccgattt |
2018608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 1963471 - 1963201
Alignment:
| Q |
1 |
ccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| |||| |||| | |||||||||||| | ||| | | || ||| ||| || || |
|
|
| T |
1963471 |
ccttggttctctccaaaaacccagatggtaaaaactgtaaaggatcaacatcagat---gctgaaagatatgcagcatttgctgtact---acttggagc |
1963378 |
T |
|
| Q |
101 |
tcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagataca |
200 |
Q |
| |
|
|| | |||||| |||||||| |||||||||||||||||||||||| | ||| ||||||| || || |||||||| || ||||| |||||||| ||| |
|
|
| T |
1963377 |
tcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaaca |
1963278 |
T |
|
| Q |
201 |
tacaaaaccgaacaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcaccagattttgt |
277 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| | ||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
1963277 |
tacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaacttattagcatcatcaccagatgttgt |
1963201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 277
Target Start/End: Original strand, 2015058 - 2015228
Alignment:
| Q |
107 |
aacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaa |
206 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| ||||| |||||| || || |||||||| || |||||||| ||||| ||||||| | |
|
|
| T |
2015058 |
aacccataagaatttatgattactcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacatacaga |
2015157 |
T |
|
| Q |
207 |
accgaacaaggctgctgtttatccaaccaggccagacactccaagccattagcatcatcaccagattttgt |
277 |
Q |
| |
|
|| ||||||||| | ||||| |||||||| |||||||| || || ||||||||||||||||||| |||| |
|
|
| T |
2015158 |
actgaacaaggccgttgtttgtccaaccatgccagacattcaaacttattagcatcatcaccagatgttgt |
2015228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 2436883 - 2436704
Alignment:
| Q |
1 |
ccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaa--ga----tatcctgcactagatgaactgctact |
94 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||| ||||||| ||||| |||||||| |||||||| || ||| |||||||||||||||| ||| | |
|
|
| T |
2436883 |
ccttggttctctctatgaacccacatggtaaaaattgcaaagggtcaacatcattttgtgctgaaactgaaaagtatgctgcactagatgaactactatt |
2436784 |
T |
|
| Q |
95 |
cggtgctcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaa |
174 |
Q |
| |
|
||||||| | |||||| |||||||| ||||||| |||||| ||| ||||| ||||| |||||||| || ||||||| |
|
|
| T |
2436783 |
tggtgctcttacaacccataagaatttctgattactcgattccagaccgaaagccagctcaacaatttgttcttgtgaaa |
2436704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 3701032 - 3700972
Alignment:
| Q |
91 |
tactcggtgctcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctag |
151 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
3701032 |
tactaggttctctcaaaacccacaagaatttctgattactcaactccaaccccaaagctag |
3700972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 5902647 - 5902402
Alignment:
| Q |
1 |
ccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| | |||| | |||| ||||| ||||| |
|
|
| T |
5902647 |
ccttggttctctccaagaacccaggtggtaaaaactgcaaaagatcaacatcattttctgctgaaagatatgcaccactggctgaa---ctacttggtgc |
5902551 |
T |
|
| Q |
101 |
tcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagataca |
200 |
Q |
| |
|
|| | |||||| |||||||| |||||||||||||||||| | ||| | ||| ||||||| || |||||||||| ||| ||||| |||||||| ||| |
|
|
| T |
5902550 |
tcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaaca |
5902451 |
T |
|
| Q |
201 |
tacaaaaccgaacaaggctgctgtttatccaaccaggccagacactcca |
249 |
Q |
| |
|
|||||||| |||||||| || ||||||| ||||| | ||||||||||| |
|
|
| T |
5902450 |
tacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactcca |
5902402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 5906131 - 5905886
Alignment:
| Q |
1 |
ccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| || |||| ||| |||| ||||||||||||| | ||| | |||||| ||| ||||| |
|
|
| T |
5906131 |
ccttggttctctccaagaacccagatggtaaaacctgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacatgctgaact---acttggtgc |
5906035 |
T |
|
| Q |
101 |
tcgcaaaacccacaagaattttgtattactcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagataca |
200 |
Q |
| |
|
|| | |||||| |||||||| |||||||||||||||||| | ||||||||| || |||| || |||||||||| ||| || || |||||||| ||| |
|
|
| T |
5906034 |
tcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttccaaaagaaaca |
5905935 |
T |
|
| Q |
201 |
tacaaaaccgaacaaggctgctgtttatccaaccaggccagacactcca |
249 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| | || |||||||| |
|
|
| T |
5905934 |
tacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactcca |
5905886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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