View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9692_low_16 (Length: 271)

Name: NF9692_low_16
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9692_low_16
NF9692_low_16
[»] chr7 (11 HSPs)
chr7 (1-256)||(2304904-2305159)
chr7 (172-240)||(25194012-25194080)
chr7 (173-240)||(2414335-2414402)
chr7 (149-240)||(17944589-17944682)
chr7 (144-230)||(3958345-3958433)
chr7 (145-242)||(8356210-8356309)
chr7 (146-239)||(13789497-13789592)
chr7 (200-240)||(15019070-15019110)
chr7 (144-223)||(37223875-37223956)
chr7 (144-233)||(23071775-23071866)
chr7 (144-224)||(37223587-37223667)
[»] chr4 (9 HSPs)
chr4 (146-240)||(7833755-7833851)
chr4 (144-233)||(19987676-19987767)
chr4 (174-240)||(56101095-56101161)
chr4 (144-230)||(19987973-19988061)
chr4 (144-240)||(38978737-38978832)
chr4 (145-240)||(11028779-11028875)
chr4 (148-240)||(18936148-18936242)
chr4 (144-240)||(45015668-45015766)
chr4 (207-240)||(41206489-41206522)
[»] chr5 (7 HSPs)
chr5 (144-237)||(36975953-36976048)
chr5 (146-239)||(15173456-15173551)
chr5 (144-239)||(22586964-22587061)
chr5 (145-242)||(10567361-10567460)
chr5 (180-239)||(22599098-22599157)
chr5 (172-237)||(36975264-36975329)
chr5 (146-240)||(10321573-10321669)
[»] chr2 (4 HSPs)
chr2 (146-237)||(26533305-26533398)
chr2 (146-212)||(26533627-26533695)
chr2 (146-237)||(31074241-31074334)
chr2 (180-236)||(41085553-41085609)
[»] chr1 (6 HSPs)
chr1 (142-242)||(32025564-32025666)
chr1 (148-211)||(34228434-34228499)
chr1 (144-242)||(32024972-32025072)
chr1 (144-242)||(32025268-32025368)
chr1 (175-240)||(4119139-4119204)
chr1 (161-235)||(51865837-51865912)
[»] chr8 (4 HSPs)
chr8 (172-242)||(15937838-15937908)
chr8 (148-240)||(21008422-21008516)
chr8 (180-240)||(21397261-21397321)
chr8 (180-240)||(21791754-21791814)
[»] scaffold0007 (1 HSPs)
scaffold0007 (144-242)||(262142-262242)
[»] chr6 (2 HSPs)
chr6 (146-242)||(30045468-30045566)
chr6 (146-218)||(32729597-32729671)
[»] chr3 (1 HSPs)
chr3 (146-230)||(3870769-3870855)
[»] scaffold0251 (1 HSPs)
scaffold0251 (144-237)||(12627-12722)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 2305159 - 2304904
Alignment:
Q  1 attcgaactctaaactcttcacttttgcacattaa-gagtgttggacaacggcatgggtcaaacaccttgacacgcttaatcttaaaagagttcatgttt 99  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2305159 attcgaactctaaactcttcacttctgcacatttatgagtgttggacaacgacatgggtcaaacaccttgacacgcttaatcttaaaagagttcacgttt 2305060  T
Q  100 catagatcagtcatcaaagacgtatatagtggaagatgtcagacattgttaggactttagtccatgaggagaccaaccctaaagactagtccatttggtg 199  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||| |||| |||||||  |||||||||||    
T  2305059 catagatcaatcatcaaagacgtatatagtggaagatgtcagacactgttaggacttta-cccatgaggagaccgacccaaaagactgatccatttggtg 2304961  T
Q  200 ggagagcctcatgacttaaataccagatcaaacacttttatatcaaatgctctgtat 256  Q
    |||||||||||||||||||||| || |||||||||||||||  |||||||| |||||    
T  2304960 ggagagcctcatgacttaaatatcacatcaaacacttttatggcaaatgctttgtat 2304904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 25194080 - 25194012
Alignment:
Q  172 ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||||| |||||||| |||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||    
T  25194080 ccaacccaaaagactaatccattaggtggaagagcctcatggcttaagtaccacatcaaacatttttat 25194012  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 2414335 - 2414402
Alignment:
Q  173 caaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    |||||| ||| |||||| |||| |||||||||| |||||||||||||||||| || ||||| ||||||    
T  2414335 caaccccaaatactagttcattaggtgggagagtctcatgacttaaataccacattaaacaattttat 2414402  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 17944682 - 17944589
Alignment:
Q  149 taggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    |||||||| || | |||||||||  ||||||  ||||||||||||||| | ||||||||||||||| ||||| ||||| ||| | |||||||||    
T  17944682 taggacttgagacaatgaggagattccaaccaaaaagactagtccattagatgggagagcctcatggcttaagtaccacatcgagcacttttat 17944589  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 3958345 - 3958433
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaa 230  Q
    ||||||||||||| |||| |||||||||  |||| || ||||||||||||  | | ||||||| ||||||||||||| ||||| |||||    
T  3958345 attgttaggacttaagtcaatgaggagagcccaatccaaaagactagtcctatagatgggagaacctcatgacttaagtaccacatcaa 3958433  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 8356210 - 8356309
Alignment:
Q  145 ttgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttatat 242  Q
    |||||||||||| || |||||||||||  ||||||| ||| ||||||||  | ||||||||| ||||| | ||||| ||||| ||||| |||||| ||||    
T  8356210 ttgttaggacttaagcccatgaggagagcccaacccaaaaaactagtcctataggtgggagaacctcaaggcttaagtaccacatcaagcactttgatat 8356309  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 13789497 - 13789592
Alignment:
Q  146 tgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacactttta 239  Q
    ||||||||||| || ||| |||||||  ||||||  ||| ||||||||| | |||||||||||| |||| ||||| ||||| ||||| ||||||||    
T  13789497 tgttaggacttaagcccaagaggagagcccaacctaaaaaactagtccaataggtgggagagccccatggcttaagtaccacatcaagcactttta 13789592  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 15019110 - 15019070
Alignment:
Q  200 ggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  15019110 ggagaacctcatgacttaaataccacatcaaacacttttat 15019070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 37223956 - 37223875
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaatacc 223  Q
    ||||||||||||| || |||| ||||||  ||||| |  |||||||||||||| |||||||||| |||||| ||||| ||||    
T  37223956 attgttaggacttaagcccataaggagagcccaacgcctaagactagtccattaggtgggagagtctcatggcttaagtacc 37223875  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 23071866 - 23071775
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaaca 233  Q
    |||||||||| || || |||||| ||||  ||||||| ||||||||||||| | ||||||||| | |||||  |||| ||||| ||||||||    
T  23071866 attgttaggatttaagcccatgatgagagcccaacccaaaagactagtccaataggtgggagaacttcatggtttaagtaccacatcaaaca 23071775  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 37223667 - 37223587
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaatacca 224  Q
    ||||||||||||| ||  ||||||||||  ||||||  ||| ||||||||||| ||||||||||||| ||| ||||| |||||    
T  37223667 attgttaggacttaagcacatgaggagagcccaacc--aaaaactagtccattaggtgggagagcctaatggcttaagtacca 37223587  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 7833755 - 7833851
Alignment:
Q  146 tgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||||||||| || ||||||||  |  ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  7833755 tgttaggacttaagcccatgagggaaacccaacccaaaagactagtccattaggtgggagagcctcatgacttaagtaccacatcaagcacttttat 7833851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 19987767 - 19987676
Alignment:
Q  144 attgttaggactttagtccatgaggagacc--aaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaaca 233  Q
    ||||||||||||| |||||||||||||| |  |||||  |||||||||||| | ||||||||| ||||||| ||||| ||||| ||||||||    
T  19987767 attgttaggacttaagtccatgaggagagcctaacccagaagactagtccaataggtgggagaacctcatggcttaagtaccacatcaaaca 19987676  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 56101095 - 56101161
Alignment:
Q  174 aaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||| ||||||||||||| | ||||  |||||| |||||||||||||||| |||||||||||||||    
T  56101095 aacccaaaagactagtccaataggtgctagagccccatgacttaaataccacatcaaacacttttat 56101161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 19988061 - 19987973
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaa 230  Q
    |||||| |||||| ||||||||||||||  |||||||  |||||||||||| | ||||||||| ||||||| ||||| ||||| |||||    
T  19988061 attgttgggacttaagtccatgaggagagcccaacccagaagactagtccaataggtgggagaacctcatggcttaagtaccacatcaa 19987973  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 38978832 - 38978737
Alignment:
Q  144 attgttaggactttagtccatgaggagaccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||||||||||| || ||||||  || ||||||  |||||||| |||||| ||||| |||||||||||  |||| ||||| |||||||||||||||    
T  38978832 attgttaggacttaagcccatgaa-agtccaaccaaaaagactaatccattaggtggaagagcctcatggtttaagtaccacatcaaacacttttat 38978737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 11028875 - 11028779
Alignment:
Q  145 ttgttaggactttagtccatgag--gagaccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    |||||||||||| || |||||||  ||||||||||| ||| | ||||||||| |||| |||| |||||||  ||||||| || |||||||||||||||    
T  11028875 ttgttaggacttaagcccatgagaagagaccaacccaaaaaa-tagtccattaggtgagagatcctcatggtttaaatatcacatcaaacacttttat 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 18936242 - 18936148
Alignment:
Q  148 ttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||||||| || |||||||||||  ||||||| |||||||| || |||  ||||||||| ||| |||| ||| || || |||||||||||||||    
T  18936242 ttaggacttaagcccatgaggagagcccaacccaaaagactattctattaagtgggagagtctcgtgacgtaagtatcacatcaaacacttttat 18936148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 45015668 - 45015766
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||||||||||| || |||||| ||||  || |||| ||| ||||||||||| | | |||||||||||||| || ||||||| |  ||||||||||||    
T  45015668 attgttaggacttaagcccatgaagagagtccgacccaaaaaactagtccattagataggagagcctcatgatttgaataccacagtaaacacttttat 45015766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 41206522 - 41206489
Alignment:
Q  207 ctcatgacttaaataccagatcaaacacttttat 240  Q
    |||||||||||||||||| |||||||||||||||    
T  41206522 ctcatgacttaaataccacatcaaacacttttat 41206489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 36976048 - 36975953
Alignment:
Q  144 attgttaggactttagtccatgaggagacc--aaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttt 237  Q
    |||||||||| || || ||||||||||| |  ||||| |||||||||||||   ||||||||||||| ||||||||||||||| ||||||||||||    
T  36976048 attgttaggatttaagcccatgaggagagcctaacccaaaagactagtccaacaggtgggagagccttatgacttaaataccacatcaaacacttt 36975953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 15173456 - 15173551
Alignment:
Q  146 tgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacactttta 239  Q
    ||||||||||| || |||||||||||  ||||||| |||||||||||||   |||||||||||||||||  |||| ||||| ||||| ||||||||    
T  15173456 tgttaggacttaagcccatgaggagagcccaacccaaaagactagtccaaaaggtgggagagcctcatgggttaagtaccacatcaagcactttta 15173551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 22586964 - 22587061
Alignment:
Q  144 attgttaggactttagtccatgaggagacc--aaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacactttta 239  Q
    ||||||||||||| || ||||||| ||| |  ||||| ||||||||||||| | |||| |||||||||||| ||||| ||| | ||||||||||||||    
T  22586964 attgttaggacttaagcccatgagaagagccaaacccaaaagactagtccaataggtgtgagagcctcatggcttaagtactacatcaaacactttta 22587061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 10567460 - 10567361
Alignment:
Q  145 ttgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttatat 242  Q
    |||||||||||| || |||||||||||  ||||||| |||||||||| || | ||||||||| ||||||| ||||| || || ||||| |||||| ||||    
T  10567460 ttgttaggacttaagcccatgaggagagcccaacccaaaagactagtgcaataggtgggagaacctcatgccttaagtatcacatcaagcactttgatat 10567361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 22599098 - 22599157
Alignment:
Q  180 aaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacactttta 239  Q
    ||||||||||||| | | || |||||||||||||||||| ||||| ||||||||||||||    
T  22599098 aaagactagtccaatagatgagagagcctcatgacttaagtaccatatcaaacactttta 22599157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 36975329 - 36975264
Alignment:
Q  172 ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttt 237  Q
    ||||||| |||||||||| || | | ||||||||||| ||||||||||||| | ||||||||||||    
T  36975329 ccaacccaaaagactagttcaatagatgggagagccttatgacttaaatactacatcaaacacttt 36975264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 10321573 - 10321669
Alignment:
Q  146 tgttaggactttagtccatgaggagacc--aaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||| ||||| || ||||||||||| |  ||| | ||||| ||||||| | |||  |||||||||||| ||||| ||||| |||||||||||||||    
T  10321573 tgttaagacttaaggccatgaggagagctcaactcaaaagattagtccaataggtaagagagcctcatggcttaagtaccacatcaaacacttttat 10321669  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 26533398 - 26533305
Alignment:
Q  146 tgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttt 237  Q
    ||||||||||| || |||||||||||  ||||||| ||||||||||||||| ||||||||| |||||||  |||| ||||| ||||| ||||||    
T  26533398 tgttaggacttaagcccatgaggagagcccaacccaaaagactagtccattaggtgggagaacctcatggtttaagtaccacatcaagcacttt 26533305  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 26533695 - 26533627
Alignment:
Q  146 tgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatg 212  Q
    ||||||||||| || |||||||||||  ||||||| ||||||||||||| | ||||||||| |||||||    
T  26533695 tgttaggacttaagcccatgaggagagcccaacccaaaagactagtccaataggtgggagaacctcatg 26533627  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 31074334 - 31074241
Alignment:
Q  146 tgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttt 237  Q
    ||||||||||| || |||||||||||  ||||||| ||||||||||||| | | |  |||| ||||||| ||||| ||||| |||||| |||||    
T  31074334 tgttaggacttaagcccatgaggagagcccaacccaaaagactagtccaatagatatgagaacctcatggcttaagtaccacatcaaatacttt 31074241  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 41085609 - 41085553
Alignment:
Q  180 aaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacactt 236  Q
    |||||||||| | || ||||||||||| ||||||||||| |||||  ||||||||||    
T  41085609 aaagactagttcgttaggtgggagagcttcatgacttaagtaccatttcaaacactt 41085553  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 32025666 - 32025564
Alignment:
Q  142 acattgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacactttta 239  Q
    ||||||||||||||| || |||||||||||  ||||||| ||| ||||||||| | ||||||||| ||||| | ||||| ||||| ||||| |||||| |    
T  32025666 acattgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttga 32025567  T
Q  240 tat 242  Q
    |||    
T  32025566 tat 32025564  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 34228434 - 34228499
Alignment:
Q  148 ttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcat 211  Q
    ||||||||| ||||||||||||||  ||||||| |||||||||||||||  |||||||||||||||    
T  34228434 ttaggacttaagtccatgaggagagtccaacccaaaagactagtccattaagtgggagagcctcat 34228499  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 32025072 - 32024972
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttata 241  Q
    ||||||||||||| || |||||||||||  ||||||| ||| ||||||||| | ||||||||| ||||| | ||||| ||||| ||||| |||||| |||    
T  32025072 attgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgata 32024973  T
Q  242 t 242  Q
    |    
T  32024972 t 32024972  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 32025368 - 32025268
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttata 241  Q
    ||||||||||||| || |||||||||||  ||||||| ||| ||||||||| | ||||||||| ||||| | ||||| ||||| ||||| |||||| |||    
T  32025368 attgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgata 32025269  T
Q  242 t 242  Q
    |    
T  32025268 t 32025268  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 4119204 - 4119139
Alignment:
Q  175 accctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    |||| ||||||||||||||| ||||| ||||||||||| ||||| |||||  || |||||||||||    
T  4119204 acccaaaagactagtccattcggtggcagagcctcatggcttaagtaccatgtcgaacacttttat 4119139  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 51865912 - 51865837
Alignment:
Q  161 ccatgaggagaccaaccct-aaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacact 235  Q
    ||||||||||||| | ||| ||||||||||| | | ||||||||| | ||||||||||| ||||| ||||||||||    
T  51865912 ccatgaggagacccaacctgaaagactagtctaataggtgggagaacttcatgacttaagtaccacatcaaacact 51865837  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 15937838 - 15937908
Alignment:
Q  172 ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttatat 242  Q
    ||||||| ||||||||||||||| |||||||||| |||||| ||||| ||||| ||||| || ||||||||    
T  15937838 ccaacccaaaagactagtccattaggtgggagagactcatggcttaagtaccacatcaagcaattttatat 15937908  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 21008422 - 21008516
Alignment:
Q  148 ttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||||||| |  |||||||||||  ||||||| |||||| |||||||| |||||| ||||||| | |||||| ||||| | |||||||||||||    
T  21008422 ttaggacttaaacccatgaggagagcccaacccaaaagacaagtccattaggtgggggagcctcgtaacttaagtaccacaacaaacacttttat 21008516  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 21397321 - 21397261
Alignment:
Q  180 aaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||||||||||||| |||||||||||| | ||  |||||||||| ||||| |||||||||    
T  21397321 aaagactagtccattaggtgggagagccccgtggtttaaataccacatcaatcacttttat 21397261  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 21791814 - 21791754
Alignment:
Q  180 aaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttat 240  Q
    ||||||||||||||| |||||||||||| | ||  |||||||||| ||||| |||||||||    
T  21791814 aaagactagtccattaggtgggagagccccgtggtttaaataccacatcaatcacttttat 21791754  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 262242 - 262142
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttata 241  Q
    ||||||||||||| || |||||||||||  ||||||| ||| ||||||||| | ||||||||| ||||| | ||||| ||||| ||||| |||||| |||    
T  262242 attgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgata 262143  T
Q  242 t 242  Q
    |    
T  262142 t 262142  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 30045566 - 30045468
Alignment:
Q  146 tgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttttatat 242  Q
    ||||||||||| || |||||||||||  ||||||| ||| ||||||||| | ||||||||| ||||| | ||||| ||||| ||||| |||||| ||||    
T  30045566 tgttaggacttaagcccatgaggagagcccaacccaaaaaactagtccaataggtgggagaacctcaaggcttaagtaccacatcaagcactttgatat 30045468  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 32729671 - 32729597
Alignment:
Q  146 tgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaa 218  Q
    |||||||||||  |||||||||||||  ||||| | ||||||||||||| | ||||||||| | |||||||||||    
T  32729671 tgttaggacttacgtccatgaggagagcccaactcaaaagactagtccaataggtgggagaacttcatgacttaa 32729597  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 3870769 - 3870855
Alignment:
Q  146 tgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaa 230  Q
    ||||||||||| || |||||||||||  ||||||| |||||||||||||  ||||||||||||||| |  ||||| ||||| |||||    
T  3870769 tgttaggacttaagcccatgaggagagcccaacccaaaagactagtccaaatggtgggagagcctcgtagcttaagtaccacatcaa 3870855  T

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Target: scaffold0251 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 12722 - 12627
Alignment:
Q  144 attgttaggactttagtccatgaggaga--ccaaccctaaagactagtccatttggtgggagagcctcatgacttaaataccagatcaaacacttt 237  Q
    ||||||||||| | || |||||||||||  ||||||| ||||||||||||| | ||||| ||| ||||||| ||||| || || ||||| ||||||    
T  12722 attgttaggacctaagcccatgaggagagcccaacccaaaagactagtccaataggtggaagaacctcatggcttaagtaacacatcaagcacttt 12627  T

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