View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9692_low_19 (Length: 253)
Name: NF9692_low_19
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 39032991 - 39033232
Alignment:
| Q |
1 |
ttgcatgcaacccaatacaaactaaaaatgattaaataaataaaccaataactcgtatccccaatcgtattgttagtgtgaacttctgtgttgacataat |
100 |
Q |
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| T |
39032991 |
ttgcatgcaacccaatacaaactaaaaatgattaaataaataaaccaa---ctcgtatccccaatcgtattgttagtgtcaacttctgtgttgacataat |
39033087 |
T |
|
| Q |
101 |
atttatctttacaatatttatcctattgtaaagaaagggttacaagatttatagttattaatgtttttaatttatctacatatttataaccctttcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39033088 |
atttatctttacaatatttatcctattgtaaagaaagggttacaagctttatag---ttaatgtttttaatttatctacatatttataaccctttcttaa |
39033184 |
T |
|
| Q |
201 |
gattagttacgtaagtttcactaatcaacacactgagctgtctcattt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39033185 |
gattagttacgtaagtttcactaatcaacacactgagctgtctcattt |
39033232 |
T |
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