View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9692_low_2 (Length: 582)
Name: NF9692_low_2
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 32017246 - 32016911
Alignment:
| Q |
10 |
gcataggggaaaacaccaacaaaacctgctgtgaaccaacccagagagcacagctcgaaaaacacagaccctccccccttaaatactaccttcttaagca |
109 |
Q |
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| T |
32017246 |
gcataggggaaaaaaccaacaaaacctgctgtgaaccaacccagagagcacagctcgaaaaacacagaccctccccccttaaatactaccttcttaagca |
32017147 |
T |
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| Q |
110 |
atcttcaggatcccaattccactagtaaaataggcaaggcaaaaccttcaatctcatcaacatccatctccaagacaacaccttgatctcttccaccatc |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32017146 |
atcttcaggatcccaattccactcgtaaaataggcaaggcaaaaccttcaatctcatcaacatccatctccaagacaacaccttgatctcttccaccatc |
32017047 |
T |
|
| Q |
210 |
tcctccacatcttttgaatgattctcaaatatctttgcatttctagctttccatatcacccaaataattgcgtgccaaactaaccaaaaccctttcagca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32017046 |
tcctccacatcttttgaatgattctcaaatatctttgcatttctagctttccatatcacccaaataattgcgtgccaaactaaccaaaaccctttccgca |
32016947 |
T |
|
| Q |
310 |
tctacttacctctcgcttccccactccaacattcaa |
345 |
Q |
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| T |
32016946 |
tctacttacctctcgcttccccactccaacattcaa |
32016911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 374 - 553
Target Start/End: Complemental strand, 32016906 - 32016727
Alignment:
| Q |
374 |
aatccatgatttttctccaaagtcaatcccatgattttcctccaattcttagaaataacactacaatgcaagaaaagatgcgttgaagattctacctaag |
473 |
Q |
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| T |
32016906 |
aatccatgatttttctccaaagtcaatcccatgattttcctccaattcttagaaataacactacaatgcaagaaaatatgtgttgaagattctaccgaag |
32016807 |
T |
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| Q |
474 |
catcgcaaaaaacacaattggtcgaacttttcgggtccaataaattctgaatggcaagattcctcccgtaggaatccgat |
553 |
Q |
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| T |
32016806 |
catcgcaaaaaacacaattggtcgaacttttcggatccaataaattctgaatggcaagatttctcctgtaggaatccgat |
32016727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 919435 - 919392
Alignment:
| Q |
177 |
ctccaagacaacaccttgatctcttccaccatctcctccacatc |
220 |
Q |
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| T |
919435 |
ctccaagacaacaccttgatctcctccactatctcttccacatc |
919392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 26397778 - 26397728
Alignment:
| Q |
167 |
caacatccatctccaagacaacaccttgatctcttccaccatctcctccac |
217 |
Q |
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| T |
26397778 |
caacatccatcgccaagacattaccttgatctcttccactatctcatccac |
26397728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 27185603 - 27185643
Alignment:
| Q |
177 |
ctccaagacaacaccttgatctcttccaccatctcctccac |
217 |
Q |
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| T |
27185603 |
ctccaagacaaccccttgatctcttccactatctcatccac |
27185643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 8453220 - 8453176
Alignment:
| Q |
166 |
tcaacatccatctccaagacaacaccttgatctcttccaccatct |
210 |
Q |
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|||||||||||||||||||||||||||| | ||| ||||| |||| |
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| T |
8453220 |
tcaacatccatctccaagacaacaccttcacctcctccacaatct |
8453176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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