View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9692_low_20 (Length: 241)
Name: NF9692_low_20
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_20 |
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| [»] chr8 (13 HSPs) |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 5649919 - 5649695
Alignment:
| Q |
17 |
tatataagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttcttacgatccttccacaacttttttcagtttgaattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5649919 |
tatataagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttcttacgatccttccacaacttttttcagtttgaattt |
5649820 |
T |
|
| Q |
117 |
aggaggctcaggtttgaataaagtgctatcatcattttcaaatttgagagttcttggaaagttttttcccatcgctaacagtcttacgcatcttctgata |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5649819 |
aggaggctcaggtttgaataaagtgctatcatcactttcaaatttgagagttcttggaaagttttttcccatcgctaacagtcttacgcatcttctgata |
5649720 |
T |
|
| Q |
217 |
aacatcttgacttctgccatagacc |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
5649719 |
aacatcttgacttctgccatagacc |
5649695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 5603252 - 5603479
Alignment:
| Q |
17 |
tatataagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttcttacgatccttccacaacttttttcagtttgaattt |
116 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
5603252 |
tatataagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttcttatgatccttccacaactcttttctgtttgaattt |
5603351 |
T |
|
| Q |
117 |
aggaggctcaggtttgaataaagtgc--tatcatcattttcaaatttgagagttcttggaaagtttttt--cccatcgctaacagtcttacgcatc-ttc |
211 |
Q |
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||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |||||| ||||| ||| |
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| T |
5603352 |
cggaggttcaggtttgaataaagtgctatatcatcaatttcaaatttgagagatcttggaaagtttttttccccatcgctaactgtcttatgcatctttc |
5603451 |
T |
|
| Q |
212 |
tgataaacatcttgacttctgccataga |
239 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
5603452 |
cgataaacatcttgacttctgtcataga |
5603479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 5632118 - 5631891
Alignment:
| Q |
17 |
tatataagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttcttacgatccttccacaacttttttcagtttgaattt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
5632118 |
tatataagttctgaagtacgtacatcatctaatacaacgaaagcttttatgcttttgagtcttcttatgatccttccacaactcttttctgtttgaattt |
5632019 |
T |
|
| Q |
117 |
aggaggctcaggtttgaataaagtgc--tatcatcattttcaaatttgagagttcttggaaagtttttt--cccatcgctaacagtcttacgcatc-ttc |
211 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |||||| ||||| ||| |
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| T |
5632018 |
cggaggttcaggtttgaataaagtgctatatcatcaatttcaaatttgagagatcttggaaagtttttttccccatcgctaactgtcttatgcatctttc |
5631919 |
T |
|
| Q |
212 |
tgataaacatcttgacttctgccataga |
239 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
5631918 |
cgataaacatcttgacttctgtcataga |
5631891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 13168912 - 13168778
Alignment:
| Q |
86 |
atccttccacaacttttttcagtttgaatttaggaggctcaggtttgaataaagtgctatcatcattttcaaatttgagagttcttggaaagttttttcc |
185 |
Q |
| |
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||||||||| |||| ||||| ||||||| |||||||| |||||||||||| ||||| || |||| |||||||||||| | |||||||||||||||||| |
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| T |
13168912 |
atccttccataactcttttctgtttgaacttaggaggttcaggtttgaatgaagtgacattatcaatttcaaatttgacaaatcttggaaagttttttcc |
13168813 |
T |
|
| Q |
186 |
catcgctaacagtcttacgcatcttctgataaaca |
220 |
Q |
| |
|
|||| | |||||||| | ||||||||||||||||| |
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| T |
13168812 |
catcaccaacagtctcatgcatcttctgataaaca |
13168778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 5550109 - 5550049
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttctt |
82 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||| |||||||||||||||||| |
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|
| T |
5550109 |
aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttctt |
5550049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 5607820 - 5607880
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttctt |
82 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||| |||||||||||||||||| |
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|
| T |
5607820 |
aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttctt |
5607880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 5627550 - 5627490
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttctt |
82 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
5627550 |
aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttctt |
5627490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 14405037 - 14404977
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttctt |
82 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||| |||||||||||||||||| |
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|
| T |
14405037 |
aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttctt |
14404977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 12177083 - 12177140
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtctt |
79 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
12177083 |
aagttctaaagtacgaacatcatctagtacaatgaaagctttcatgcgtttgagtctt |
12177140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 12421511 - 12421568
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtctt |
79 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||||||||| |||| |||||||||| |
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|
| T |
12421511 |
aagttctaaagtacgaacatcatctagtacaatgaaagctttcatgcgtttgagtctt |
12421568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 6310251 - 6310310
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttct |
81 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||| |||| |||||||||||| |
|
|
| T |
6310251 |
aagttctgaattatgtacatcatctattacaatgaaagatttcatgcgtttgagtcttct |
6310310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 12188404 - 12188461
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtctt |
79 |
Q |
| |
|
||||||| || |||| |||||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
12188404 |
aagttctaaaatacgaacatcatctagtacaatgaaagctttcatgcgtttgagtctt |
12188461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 12432832 - 12432889
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtctt |
79 |
Q |
| |
|
||||||| || |||| |||||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
12432832 |
aagttctaaaatacgaacatcatctagtacaatgaaagctttcatgcgtttgagtctt |
12432889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 13816 - 13876
Alignment:
| Q |
22 |
aagttctgaagtacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttctt |
82 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
13816 |
aagttctgaattatgtacatcatctagtacaatgaaagatttcatgcttttgagtcttctt |
13876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 19492815 - 19492863
Alignment:
| Q |
33 |
tacgtacatcatctaatacaatgaaagcttttatgcttttgagtcttct |
81 |
Q |
| |
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|||| |||||||||| ||||||||||||||| || | |||||||||||| |
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|
| T |
19492815 |
tacgaacatcatctagtacaatgaaagctttcattcctttgagtcttct |
19492863 |
T |
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Back To:
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