View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9692_low_5 (Length: 512)
Name: NF9692_low_5
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1956618 - 1956853
Alignment:
| Q |
1 |
agaggaaagtagccagatataaccaattcagaagagcattactattgatacctatttcaaaatgggaagatttgacagatgataaggaagtaatcaaagt |
100 |
Q |
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| T |
1956618 |
agaggaaagtagccaaatataaccaattcagaagatcattattaatgatacctatttcaaaatgggaagatttgacagatgataaggaagtaatcaaagt |
1956717 |
T |
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| Q |
101 |
attggaagaggtatatgggaatgatgttgaggagcttgatacactagtaggtctcatggcagagaagaagataaagggttttgcaattagtgagacatct |
200 |
Q |
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| T |
1956718 |
attggaagaggtatatggaaatgatgttgaggagcttgatacactagttggtctcatggcagagaagaagataaagggttttgcaattagtgagacatct |
1956817 |
T |
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| Q |
201 |
tttgtgatattccttatcatggcatcaaggtaaaaa |
236 |
Q |
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| T |
1956818 |
tttgtgatattccttatcatggcatctaggtaaaaa |
1956853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 1927417 - 1927701
Alignment:
| Q |
1 |
agaggaaagtagccagatataaccaattcagaagagcattactattgatacctatttcaaaatgggaagatttgacagatgataaggaagtaatcaaagt |
100 |
Q |
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| T |
1927417 |
agaggaatgtacctagatataaccaactaaggagaggactactaatgatacctatttcaaaatgggaagatttgacagatgataaagaagtaattaaagt |
1927516 |
T |
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| Q |
101 |
attggaagaggtatatgggaatgatgttgaggagcttgatacactagtaggtctcatggcagagaagaagataaagggttttgcaattagtgagacatct |
200 |
Q |
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| T |
1927517 |
attggaagaggtatatggagatgatattgaggagcttgatgtacaagtaggtctaatggcagagaagaagataaagggttttgcaataagtgaaacagct |
1927616 |
T |
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| Q |
201 |
tttgtgatattccttatcatggcatcaaggtaaaaaat-actaaaacttgttttgttttatttatgtttataccttcataatatt |
284 |
Q |
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| T |
1927617 |
tttacaatatttcttctcatggcatctaggtaaaaaataaattacaattattttattttattgatgtttttaccttcataatatt |
1927701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 1941535 - 1941761
Alignment:
| Q |
9 |
gtagccagatataaccaattcagaagagcattactattgatacctatttcaaaatgggaagatttgacagatgataaggaagtaatcaaagtattggaag |
108 |
Q |
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||||| ||||||||||||||||| |||| | || | ||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
1941535 |
gtagcaagatataaccaattcaggagaggactattcatgatacctatttctaaatgggaagatttaacagatgataaggaagttataaaagtattggaag |
1941634 |
T |
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| Q |
109 |
aggtatatgggaatgatgttgaggagcttgatacactagtaggtctcatggcagagaagaagataaagggttttgcaattagtgagacatcttttgtgat |
208 |
Q |
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| T |
1941635 |
agatatatggtgatgatgttgaggagcttgatgtgcttgtaggtctcatggcagagaagaagataaagggttttgcaattagtgagacagcttttttaat |
1941734 |
T |
|
| Q |
209 |
attccttatcatggcatcaaggtaaaa |
235 |
Q |
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|||||| |||||||||| |||||||| |
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| T |
1941735 |
cttccttctcatggcatctaggtaaaa |
1941761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 36774869 - 36774912
Alignment:
| Q |
439 |
taatttttaaatcccataagaacaagtgtgatatgcctcagtat |
482 |
Q |
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| T |
36774869 |
taatttttaaatcccataagaacaagtgtgatatgcctcagtat |
36774912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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