View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9692_low_6 (Length: 485)
Name: NF9692_low_6
Description: NF9692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9692_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 51861486 - 51861309
Alignment:
| Q |
75 |
agcacagctatataacacgaacaaatttccacgggatccacgaaaatgctgaggtgtatgcatatcagttaaggataattcaatcacttggtttttgacg |
174 |
Q |
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| T |
51861486 |
agcactgctatataacacgaacaaatttccacgggatccatgaaaatgctgaggtgtatgcatatcagttaaggataattcaatcacttggtttttggcg |
51861387 |
T |
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| Q |
175 |
gaaatcaggagggagataattgaaatcaatggttcgttattacccgtgaataaacttttcgtggtcacaatcatttcc |
252 |
Q |
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| T |
51861386 |
gaaatcaggatggagataattgaaatcaatggttcgttattacacgtgaataaatttttcgtggtcacaatcatttcc |
51861309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 367 - 468
Target Start/End: Complemental strand, 30790998 - 30790898
Alignment:
| Q |
367 |
atatgcagttgtcttttcatccaaaaagtgcttgttcaatatatagaatacttgataacaaaacaaagattacattcaaaagagcaataacaacataatt |
466 |
Q |
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| T |
30790998 |
atatgcagttgtcttttcatccaaaa-gtgcttgttcaatatatagaatacttgataacaaaacaaagattacattcaaaagagcaataacaacataatt |
30790900 |
T |
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| Q |
467 |
ta |
468 |
Q |
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| T |
30790899 |
ta |
30790898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 30791126 - 30791053
Alignment:
| Q |
254 |
ttgatatttattatgatgtcttaaaaaagtgacggttctatatattgacataatcgaaacgcatgcatttggtt |
327 |
Q |
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| T |
30791126 |
ttgatatttattatgatgtcttaaaaaagtgacggttctatatattgatataatcgaaacgcatgcatttggtt |
30791053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 30791190 - 30791118
Alignment:
| Q |
1 |
atgattaataggtaacaaaagtagataagtggtagtattgannnnnnncagagggttgatgatattgatattt |
73 |
Q |
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| T |
30791190 |
atgatcaataggtaacaaaagtagataagtggtagtattgatttttttcagagggttgatgatattgatattt |
30791118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 255
Target Start/End: Original strand, 15996427 - 15996610
Alignment:
| Q |
74 |
gagcacagctatataacacgaacaaatttccacgggatccacgaaaatgctgaggtgtatgcatatcagttaaggataattcaatcacttggtttttgac |
173 |
Q |
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| T |
15996427 |
gagcatagctatataacacgaatgaatttccatgagaaccacaaaagtgcttaggtgtattcatatttgttagggataatgcagttccttccttcttggc |
15996526 |
T |
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| Q |
174 |
ggaaatca-ggagggagataattgaaatcaatggttcgttatta-cccgtgaataaacttttcgtggtcacaatcatttccctt |
255 |
Q |
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| T |
15996527 |
ggaaatcagggagggagagaattgaaatcaaaggcccgtaattagcccgtgaatcaacttttcgtggtaacaatcgtttccctt |
15996610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 8489136 - 8489057
Alignment:
| Q |
105 |
acgggatccacgaaaatgctgaggtgtatgcatatcagttaaggataattcaatcacttg-gtttttgacggaaatcagg |
183 |
Q |
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| T |
8489136 |
acgggaaccacgaaaatgcttagctgtgtgcatattagttcaggataattcaatatcttgcttttttggcggaaatcagg |
8489057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 37020962 - 37020831
Alignment:
| Q |
72 |
ttgagcacagctatataacacgaacaaatttccacgggatccacgaaaatgctgaggtgtatgcatatcagttaaggataattcaatcacttggtttttg |
171 |
Q |
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||||||||||||| | ||||||| ||| ||| |||||| ||||||||| |||||| ||| ||||||| |||| ||||||||||||| ||| |||||| |
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| T |
37020962 |
ttgagcacagctacgttacacgaaaaaaattc-acgggaaccacgaaaaagctgagttgtgtgcatattagttcaggataattcaataactgcttttttg |
37020864 |
T |
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| Q |
172 |
acggaaatca-ggagggagataattgaaatcaa |
203 |
Q |
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| T |
37020863 |
gcggaaatcagggagggagtggattgaaatcaa |
37020831 |
T |
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