View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9693_high_3 (Length: 366)
Name: NF9693_high_3
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 50506665 - 50506819
Alignment:
| Q |
95 |
aaaggaactcaacaaaaaagttaacaataagattcaaatacagagacatatttcatattattgtttaatgttatgtttgatttgttttgcaataaaattg |
194 |
Q |
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| T |
50506665 |
aaaggaactcgacaaaaaaattaacaataagattcaaatacagagacatatttcatattattgtttaatgttatgtttgatttgttttgcaataaaattg |
50506764 |
T |
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| Q |
195 |
aaacagaaacttagcaaaaattgcaatgggaaacgaatagacatataagtaaaaa |
249 |
Q |
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| T |
50506765 |
aaacagaaacttagcaaaaattgcaatgggaaacgaatagacatataagtaaaaa |
50506819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 50506857 - 50506961
Alignment:
| Q |
251 |
tttcttagtcgttcaaaaaatatttgtttgtttatagtcatttgcaaatatgtcactttttaccgtttgtaatatctgtgagtattaagattggtcaata |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50506857 |
tttcttagtcgttcaaaaaatatttgtttgtttatagtcatttgcaaatatgtcactttttaccgtttgtaatatctgtgagtattaagattggtcaata |
50506956 |
T |
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| Q |
351 |
ttcat |
355 |
Q |
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||||| |
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| T |
50506957 |
ttcat |
50506961 |
T |
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