View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9693_high_5 (Length: 239)
Name: NF9693_high_5
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 48001690 - 48001913
Alignment:
| Q |
1 |
tattttattaggactcgtcacgaaatatcattggaacgaggtggagattctacatgtgatcatggagattatgaaaatgttgttgttgaagaaatctctg |
100 |
Q |
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| T |
48001690 |
tattttattaggactggtcacgaaatatcattggaacgaggtggagattctacatgtgatcatggagattatgaaaatgttgttggtgaagaaatctctg |
48001789 |
T |
|
| Q |
101 |
ggacacaagctggtactgtctatagtggcgtaaccaatgtttctgagcttgagatgctgttgggagcatactttgtgcaaattggaggcacagtcaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48001790 |
ggacacaagctggtactgtctatagtggcgtaaccaatgtttctgagcttgagatgctgttgggagcatactttgtgcaaattggaggcacagtcaacaa |
48001889 |
T |
|
| Q |
201 |
aatatctgcggtacacaatctttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
48001890 |
aatatctgcggtacacaatctttt |
48001913 |
T |
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