View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9693_low_1 (Length: 527)
Name: NF9693_low_1
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Complemental strand, 9789042 - 9788540
Alignment:
| Q |
9 |
gaagaagcaactttcggttttatcaaggatcgaatttggcataaaattaacccttagagtagcaactgtctatcaaaagctggaagaaaggtaatgatca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9789042 |
gaagaagcaactttcggttttatcaaggatcgaatttggcataaaattaacacttagagtagaaactgtctatcaaaagctggaagaaaggtaatgatca |
9788943 |
T |
|
| Q |
109 |
aataagttctccaatctatcccatcatatatcatgagcgtgttctggcttcccaccaaatcaatttatgttatagagaatatatgaaacaacatgggaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9788942 |
aataagttctccaatctatcccatcatatatcatgagcgtgttctggcttcccaccaaatcaatttatgttatagagaatatatgaaacaacatgggaaa |
9788843 |
T |
|
| Q |
209 |
aactgtatgttcataaaaattatgaaggaatgggatttaaataccttactttctttaatgtggctattcttgggaaacagggatgaatctttcaaactga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9788842 |
aactgtatgttcataaaaattatgaaggaatgggatttaaagaccttactttctttaatgtggctattcttgggaaacagggatgaatctttcaaactga |
9788743 |
T |
|
| Q |
309 |
tctttctagctttctaggctttggcgctaacatacatgtcctaggtgcaccttggctcaaagatgggttgtccttaataatagatagcctcatatatgcg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9788742 |
tctttctagctttctaggctttggcgctaacatacatgtcctaggtgcaccttggctcaaagatgggttgtccttaataatagatagcctcatatatgcg |
9788643 |
T |
|
| Q |
409 |
ccattggcccatgtgaaggtgtttaactttattaagcaatcaacaatgtttggaaagctcccttaatttacaaccnnnnnnnnnatcagaatactgcatg |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
9788642 |
ccattggcccatgtgaaggtgtttaactttattaagcaatcaacaatgtttggaaagctcccttaatttacaacctttttttttatcagaatactgcatg |
9788543 |
T |
|
| Q |
509 |
att |
511 |
Q |
| |
|
||| |
|
|
| T |
9788542 |
att |
9788540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 16769250 - 16769140
Alignment:
| Q |
27 |
tttatcaaggatcgaatttggcataaaattaacccttagagtagcaactgtctatcaaaagctggaagaaaggtaatgatcaaataagttctccaatcta |
126 |
Q |
| |
|
|||||||||||| |||| ||||| ||| | ||| ||||||||||||| |||||||| |||||| | | |||||||||||||||| || | ||||| | |
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|
| T |
16769250 |
tttatcaaggatagaatatggcagaaagtcaactcttagagtagcaaatgtctatccaaagctaaacgtgaggtaatgatcaaataggtcattcaatcaa |
16769151 |
T |
|
| Q |
127 |
tcccatcatat |
137 |
Q |
| |
|
|| |||||||| |
|
|
| T |
16769150 |
tctcatcatat |
16769140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 30303209 - 30303337
Alignment:
| Q |
18 |
actttcggttttatcaaggatcgaatttggcataaaattaacccttagagtagcaactgtctatcaaaagctggaagaaaggtaatgatcaaataagttc |
117 |
Q |
| |
|
||||| |||||||||||||| || |||||||| ||||||||| || |||||| || ||| | || |||||||| || ||||||||||||||| || | |
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|
| T |
30303209 |
acttttggttttatcaaggaccgtatttggcacaaaattaacagttggagtagtaagtgtttgtccaaagctggtcgagaggtaatgatcaaatcggtac |
30303308 |
T |
|
| Q |
118 |
tccaatctatcccatcatatatcatgagc |
146 |
Q |
| |
|
| ||||| |||||||| ||||| |||||| |
|
|
| T |
30303309 |
tacaatcaatcccatcttatattatgagc |
30303337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 28591723 - 28591595
Alignment:
| Q |
18 |
actttcggttttatcaaggatcgaatttggcataaaattaacccttagagtagcaactgtctatcaaaagctggaagaaaggtaatgatcaaataagttc |
117 |
Q |
| |
|
||||| |||||||||||||| || |||||||| ||||||||| || |||||| || ||| | || |||||||| || ||||||||||||||| || | |
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|
| T |
28591723 |
acttttggttttatcaaggaccgtatttggcacaaaattaacagttggagtagtaagtgtttgtccaaagctggtcgagaggtaatgatcaaatcggtac |
28591624 |
T |
|
| Q |
118 |
tccaatctatcccatcatatatcatgagc |
146 |
Q |
| |
|
| ||||| |||||||| ||||| |||||| |
|
|
| T |
28591623 |
tacaatcaatcccatcttatattatgagc |
28591595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 34073101 - 34072969
Alignment:
| Q |
13 |
aagcaactttcggttttatcaaggatcgaatttggcataaaattaacccttagagtagcaactgtctatcaaaagctggaagaaaggtaatgatcaaata |
112 |
Q |
| |
|
||||||||||| ||||||||||||| || | ||||| ||||||| | || |||||| || ||| | || ||||| || ||| |||| ||||||||||| |
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|
| T |
34073101 |
aagcaactttcagttttatcaaggacagagtgtggcaaaaaattagcagttggagtagtaaatgtttgtccaaagcaggtagagaggtcatgatcaaata |
34073002 |
T |
|
| Q |
113 |
agttctccaatctatcccatcatatatcatgag |
145 |
Q |
| |
|
||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
34073001 |
tgttcttcaagctattccatcatatgtcatgag |
34072969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 26392085 - 26392007
Alignment:
| Q |
10 |
aagaagcaactttcggttttatcaaggatcgaatttggcataaaattaacccttagagtagcaactgtctatcaaaagc |
88 |
Q |
| |
|
||||||| ||||| || |||||||||||||| |||||||| |||||||| ||| ||||||||| |||||||| ||||| |
|
|
| T |
26392085 |
aagaagctacttttggatttatcaaggatcgcatttggcacaaaattaattcttggagtagcaaatgtctatctaaagc |
26392007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 26953210 - 26953082
Alignment:
| Q |
18 |
actttcggttttatcaaggatcgaatttggcataaaattaacccttagagtagcaactgtctatcaaaagctggaagaaaggtaatgatcaaataagttc |
117 |
Q |
| |
|
||||| |||||||||||||| | |||||||| ||||||||| || ||||| || ||| | || |||||||| || ||||||||||||||| || | |
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|
| T |
26953210 |
acttttggttttatcaaggaccatatttggcacaaaattaacagttggagtaataagtgtttgtccaaagctggtcgagaggtaatgatcaaatcggtac |
26953111 |
T |
|
| Q |
118 |
tccaatctatcccatcatatatcatgagc |
146 |
Q |
| |
|
| ||||| |||||||| ||||| |||||| |
|
|
| T |
26953110 |
tacaatcaatcccatcttatattatgagc |
26953082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 21278037 - 21277988
Alignment:
| Q |
97 |
aggtaatgatcaaataagttctccaatctatcccatcatatatcatgagc |
146 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||||| |||||| |
|
|
| T |
21278037 |
aggtaatgatcaaatcggtactccaatctatcccatcttatattatgagc |
21277988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 23061112 - 23060984
Alignment:
| Q |
18 |
actttcggttttatcaaggatcgaatttggcataaaattaacccttagagtagcaactgtctatcaaaagctggaagaaaggtaatgatcaaataagttc |
117 |
Q |
| |
|
||||| |||||||||||||| || |||||||| ||||||||| || |||||| || ||| | || |||| ||| || ||||||||||||||| || |
|
|
| T |
23061112 |
acttttggttttatcaaggaccgtatttggcacaaaattaacagttggagtagtaagtgtttgtccaaagttggtcgagaggtaatgatcaaatcggtat |
23061013 |
T |
|
| Q |
118 |
tccaatctatcccatcatatatcatgagc |
146 |
Q |
| |
|
| ||||| |||||||| ||||| |||||| |
|
|
| T |
23061012 |
tacaatcaatcccatcttatattatgagc |
23060984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 21116983 - 21117071
Alignment:
| Q |
216 |
tgttcataaaaattatgaaggaatgggatttaaataccttactttctttaatgtggctattcttgggaaacagggatgaatctttcaaa |
304 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| | || || | |||||||| || || ||||| ||||||||||||| ||||||| |
|
|
| T |
21116983 |
tgttcataaaaattatggtggaatggggtttaaagatctcacatcttttaatgtagcaatgcttggtaaacagggatgaaaatttcaaa |
21117071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 25906106 - 25905986
Alignment:
| Q |
26 |
ttttatcaaggatcgaatttggcataaaattaacccttagagtagcaactgtctatcaaaagctggaagaaaggtaatgatcaaataagttctccaatct |
125 |
Q |
| |
|
|||||||||||| || |||||| | ||||||||| || |||||| || ||| | || |||||||| || ||||||||||||||| || || ||||| |
|
|
| T |
25906106 |
ttttatcaaggaccgtatttggtacaaaattaacaattggagtagtaagtgtttgtccaaagctggtcgagaggtaatgatcaaatcggtactacaatca |
25906007 |
T |
|
| Q |
126 |
atcccatcatatatcatgagc |
146 |
Q |
| |
|
||| |||| ||||| |||||| |
|
|
| T |
25906006 |
atctcatcttatattatgagc |
25905986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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