View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9693_low_10 (Length: 277)
Name: NF9693_low_10
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 35265005 - 35264750
Alignment:
| Q |
17 |
ataaccaagaggttgaatatgctctttcctcatctgctaagaattaactgacttttgctaccttctaatccaagttagtgaagaatagttggtgtagtgt |
116 |
Q |
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| T |
35265005 |
ataactaagaggttgaatatgctctttcctcatcttctaagaattaactgacttttgctatcttctaatccaagttagtgaagaatagttggtgtagtgt |
35264906 |
T |
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| Q |
117 |
tataggccataccatatatcaaaatccatggctagtagctaccaccttgggtgcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaa |
216 |
Q |
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| T |
35264905 |
tataggccataccatatatcaaaatccatggctagtagctaccaccttgggttcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaa |
35264806 |
T |
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| Q |
217 |
ttctgatgtccttgtgacttagagaatttggaatcggttcctttcttcatctcact |
272 |
Q |
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| T |
35264805 |
ttctgatgtccttgtgacttagggaatttggaatcggttcctttctccatatcact |
35264750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 35272337 - 35272253
Alignment:
| Q |
18 |
taaccaagaggttgaatatgctctttcctcatctgctaagaattaactgacttttgctaccttctaatccaagttagtgaagaat |
102 |
Q |
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| T |
35272337 |
taacaaagaggttgagtgtgctctttcctcatctgctaagaattaactgacttttgctatcttctaatcaaagttagtgaagaat |
35272253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 35272235 - 35272130
Alignment:
| Q |
152 |
tagctaccaccttgggtgcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaa-ttctgatgtccttgtgacttagagaatttggaat |
250 |
Q |
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| T |
35272235 |
tagcaaccacctcgggttcaaacccaaattcaaagaacgttcagtcaaacaagtgcttgcaaaaatttccgatgtccctgtgactt--agaatttggaat |
35272138 |
T |
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| Q |
251 |
cggttcct |
258 |
Q |
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| T |
35272137 |
ctgttcct |
35272130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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