View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9693_low_11 (Length: 273)
Name: NF9693_low_11
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 19278745 - 19278998
Alignment:
| Q |
1 |
gtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggcgatgaagagaaaagaatactcgaaagaaatgaagatgcggatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19278745 |
gtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaagagaaaagaatactcgaaagaaatgaagacgcggatg |
19278844 |
T |
|
| Q |
101 |
aatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19278845 |
aatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagatgtatattagagacactgctctcaatctcttggc |
19278944 |
T |
|
| Q |
201 |
tgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatc |
254 |
Q |
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| T |
19278945 |
tgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatc |
19278998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 12963489 - 12963735
Alignment:
| Q |
2 |
tagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggcgatgaagagaaaagaatactcgaaagaaatgaagatgcggatga |
101 |
Q |
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||||| |||||||| |||| |||||||| |||| ||||||||||||||||||| || |||||||||| ||| | | |||| || ||||| | |||||| |
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| T |
12963489 |
tagctcaagaaaatattcataaattcttgtacaattgtatatcttattacaaagacggtgaagagaaacgaacatttaaaagcaacgaagacgtggatga |
12963588 |
T |
|
| Q |
102 |
atctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggct |
201 |
Q |
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| T |
12963589 |
atctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaatggctgagaaatatattataaacacaacactcaatctcttagct |
12963688 |
T |
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| Q |
202 |
gcaggtaatggaacaattagttcgggtctcaattggttcttttggct |
248 |
Q |
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| T |
12963689 |
gcaggaagtggaacagttagttcaggtctaagttggttcttttggct |
12963735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 13244177 - 13244345
Alignment:
| Q |
83 |
gaaatgaagatgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacga---atgagacgtatattagaga |
179 |
Q |
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| T |
13244177 |
gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagaga |
13244276 |
T |
|
| Q |
180 |
cactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggct |
248 |
Q |
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|||||| | |||||||| | |||||| ||||||||||||||||| ||||| | ||||||||||||||| |
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| T |
13244277 |
cactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggct |
13244345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 13080562 - 13080689
Alignment:
| Q |
121 |
aaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaatta |
220 |
Q |
| |
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||||| |||||| ||||| |||||| |||||| |||| | ||||| |||||||||||| ||| | |||||||||||| |||||| ||||||||||||| |
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| T |
13080562 |
aaagatctaatggaggaaggattggaaaagggggaaatggttgagaggtatattagagatactacaatcaatctcttggttgcaggaaatggaacaatta |
13080661 |
T |
|
| Q |
221 |
gttcgggtctcaattggttcttttggct |
248 |
Q |
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|| | ||||||| |||||| |||||||| |
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| T |
13080662 |
gtacaggtctcacttggtttttttggct |
13080689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 248
Target Start/End: Complemental strand, 13272082 - 13271954
Alignment:
| Q |
126 |
actaatgaaggaaagattgggaaagggcgaaacgaatgagac------gtatattagagacactgctctcaatctcttggctgcaggtaatggaacaatt |
219 |
Q |
| |
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||||||||||||| | |||||||||| ||||||||||| | |||||||||||||||||| ||| ||||||||||||||| ||||||||| || |
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| T |
13272082 |
actaatgaaggaaggcttgggaaaggaagaaacgaatgaaaatgaaaagtatattagagacactgcattcactctcttggctgcaggaaatggaacagtt |
13271983 |
T |
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| Q |
220 |
agttcgggtctcaattggttcttttggct |
248 |
Q |
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||||| ||||| | ||||||||||||||| |
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| T |
13271982 |
agttcaggtctaagttggttcttttggct |
13271954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 13086555 - 13086475
Alignment:
| Q |
168 |
gtatattagagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggct |
248 |
Q |
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|
|||||||||||||||||| |||||||||| |||||||| | ||||||| ||||||| ||||| | |||||||| |||||| |
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| T |
13086555 |
gtatattagagacactgcattcaatctcttagctgcaggaagtggaacagttagttcaggtctaagttggttctcttggct |
13086475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13086731 - 13086656
Alignment:
| Q |
1 |
gtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttatta---caaaggcgatgaagagaaaagaa |
73 |
Q |
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|||||| |||||||||||||| |||||||| |||||||||| ||||||| |||||| |||||||||| ||||| |
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| T |
13086731 |
gtagctcaagaaaatcttcaccaattcttgtccaaatgtataacttattattccaaaggtgatgaagagagaagaa |
13086656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 13214314 - 13214251
Alignment:
| Q |
118 |
gtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagaca |
181 |
Q |
| |
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||||||| ||||||||||||| |||| |||||||| |||| | |||||| |||| ||||||||| |
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| T |
13214314 |
gtaaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaagtatcttagagaca |
13214251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 13244124 - 13244186
Alignment:
| Q |
3 |
agctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggcgatgaaga |
65 |
Q |
| |
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||||| ||||||||||||| |||||||| | ||||||||| || |||||||||| ||||||| |
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|
| T |
13244124 |
agctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaaga |
13244186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 19727647 - 19727585
Alignment:
| Q |
119 |
taaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagaca |
181 |
Q |
| |
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|||||| ||||||||||||| ||| |||||||| |||| |||||||| |||| ||||||||| |
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| T |
19727647 |
taaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaagtatcttagagaca |
19727585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 13064947 - 13065040
Alignment:
| Q |
155 |
aaacgaatgagacgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggct |
248 |
Q |
| |
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|||||| ||||| |||| ||||||||||||| ||||||| ||| || || || || ||| ||||||| ||||||| ||||||||||||||| |
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| T |
13064947 |
aaacgagtgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggct |
13065040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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