View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9693_low_12 (Length: 269)
Name: NF9693_low_12
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 15994267 - 15994493
Alignment:
| Q |
19 |
agtgtagcaataaccactctatagagcatacattaagcaattaaagaatagactatactgcaaaaattatgcagaaagttaatcaccaaatgcctccaag |
118 |
Q |
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| T |
15994267 |
agtgtagcaataaccattttatagagcaaacattaagcaattaaagaatagactatactgcaaaaattatgcagaaagttaatcaccaaatgccttcaag |
15994366 |
T |
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| Q |
119 |
attaaatagcctttgggaaatacattaacatagacatcctcctgacattgcaatcaaaaaca-actccaatacctcaagtgcacatcctcctcggctaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||| ||||||||||| ||||||||||||| |||||| |
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| T |
15994367 |
attaaatagcctttgggaaatacattaacatagacatcgtcctggcgttgcaatcaaaaacacactcgaatacctcaagcgcacatcctcctcagctaca |
15994466 |
T |
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| Q |
218 |
tcaatacccaacatgctgcaagataac |
244 |
Q |
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||||||||||||||||||||||||||| |
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| T |
15994467 |
tcaatacccaacatgctgcaagataac |
15994493 |
T |
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