View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9693_low_14 (Length: 250)

Name: NF9693_low_14
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9693_low_14
NF9693_low_14
[»] chr3 (10 HSPs)
chr3 (1-228)||(5743391-5743617)
chr3 (1-228)||(5780350-5780576)
chr3 (1-239)||(5668281-5668521)
chr3 (1-245)||(5677775-5678021)
chr3 (1-239)||(5751073-5751313)
chr3 (1-239)||(5788032-5788272)
chr3 (105-239)||(5791638-5791772)
chr3 (2-82)||(5692030-5692110)
chr3 (103-239)||(5692106-5692242)
chr3 (8-72)||(5791569-5791633)
[»] chr4 (1 HSPs)
chr4 (16-86)||(51988914-51988984)
[»] chr8 (4 HSPs)
chr8 (14-86)||(13146726-13146798)
chr8 (16-86)||(13145662-13145732)
chr8 (18-72)||(41490873-41490927)
chr8 (16-72)||(26378979-26379035)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5743391 - 5743617
Alignment:
Q  1 tttgattctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagttatannnnnnnctattat 100  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||    
T  5743391 tttgatgctcaggatgttgaagattcttcttatttcttcgtcatcatcagctaccatatgttctatttggtctttcacaagttatatttttt-ctattat 5743489  T
Q  101 ttcaagtgtgatttctttgattaaaacattaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctaatggtgaaaaacaagaagttgtg 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  5743490 ttcaagtgtgatttctttgattaaaacatcaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtg 5743589  T
Q  201 tggcgtttgtgagtttgcatctcaatct 228  Q
    ||||||||||||||||||||||||||||    
T  5743590 tggcgtttgtgagtttgcatctcaatct 5743617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5780350 - 5780576
Alignment:
Q  1 tttgattctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagttatannnnnnnctattat 100  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||    
T  5780350 tttgatgctcaggatgttgaagattcttcttatttcttcgtcatcatcagctaccatatgttctatttggtctttcacaagttatatttttt-ctattat 5780448  T
Q  101 ttcaagtgtgatttctttgattaaaacattaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctaatggtgaaaaacaagaagttgtg 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  5780449 ttcaagtgtgatttctttgattaaaacatcaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtg 5780548  T
Q  201 tggcgtttgtgagtttgcatctcaatct 228  Q
    ||||||||||||||||||||||||||||    
T  5780549 tggcgtttgtgagtttgcatctcaatct 5780576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5668281 - 5668521
Alignment:
Q  1 tttgattctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagttatannnnnnnctattat 100  Q
    |||||| |||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||| ||||||||||||       | |||||    
T  5668281 tttgatgctcaggatgttgaagattctttttatttccacgacatcatcagctaccatatgttctatttggtctttcacaagttatatctttt-caattat 5668379  T
Q  101 tt---caagtgtgatttctttgattaaaacattaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctaatggtgaaaaacaagaagtt 197  Q
    ||   ||||||| | ||||||||||||||||| ||||||||| |||||||||||| || | ||||||||||||  |||||| | ||||||||| |||| |    
T  5668380 tttatcaagtgtaacttctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgttattctaacgatgaaaaacatgaagct 5668479  T
Q  198 gtgtggcgtttgtgagtttgcatctcaatctttattgtctgt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  5668480 gtgtggcgtttgtgagtttgcatctcaatctctattgtctgt 5668521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5677775 - 5678021
Alignment:
Q  1 tttgattctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagttatannnnnnnctattat 100  Q
    |||||| ||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||||||||||       | ||| |    
T  5677775 tttgatgctcaggatgttgaagattcttttcatttctacgacatcatcagctaccatatgttctatttggtctttcacaagttatatctttt-caatttt 5677873  T
Q  101 tt---caagtgtgatttctttgattaaaacattaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctaatggtgaaaaacaagaagtt 197  Q
    ||   ||||||| | ||||||||||||||||| ||||||||| |||||||||||| || | |||||||||||| ||||||| | ||||||||| |||| |    
T  5677874 tttatcaagtgtaacttctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagct 5677973  T
Q  198 gtgtggcgtttgtgagtttgcatctcaatctttattgtctgtgcttct 245  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  5677974 gtgtggcatttgtgagtttgcatctcaatctctattgtctgtgattct 5678021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5751073 - 5751313
Alignment:
Q  1 tttgattctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagttatannnnnnnctattat 100  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||       ||||||     
T  5751073 tttgatgctcagcatgttgaagattctttttatttcttcgtcatcatcagctactatgtgttctatttggtctgtcacaagttatatctttt-ctattag 5751171  T
Q  101 ttcaa---gtgtgatttctttgattaaaacattaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctaatggtgaaaaacaagaagtt 197  Q
    || ||   |||||||||||||||||||||||| ||||||||  ||||| |||||  ||  |||| |||||||||||| | | |||||| | |||||||||    
T  5751172 tttaacgagtgtgatttctttgattaaaacatcaagtcccaaccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagtt 5751271  T
Q  198 gtgtggcgtttgtgagtttgcatctcaatctttattgtctgt 239  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  5751272 gtgtggcgtttgtgagtttgcatctcaatctccattgtctgt 5751313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5788032 - 5788272
Alignment:
Q  1 tttgattctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagttatannnnnnnctattat 100  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||       ||||||     
T  5788032 tttgatgctcagcatgttgaagattctttttatttcttcgtcatcatcagctactatgtgttctatttggtctgtcacaagttatatctttt-ctattag 5788130  T
Q  101 ttcaa---gtgtgatttctttgattaaaacattaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctaatggtgaaaaacaagaagtt 197  Q
    || ||   |||||||||||||||||||||||| ||||||||  ||||| |||||  ||  |||| |||||||||||| | | |||||| | |||||||||    
T  5788131 tttaacgagtgtgatttctttgattaaaacatcaagtcccaaccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagtt 5788230  T
Q  198 gtgtggcgtttgtgagtttgcatctcaatctttattgtctgt 239  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  5788231 gtgtggcgtttgtgagtttgcatctcaatctccattgtctgt 5788272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 5791638 - 5791772
Alignment:
Q  105 agtgtgatttctttgattaaaacattaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctaatggtgaaaaacaagaagttgtgtggc 204  Q
    ||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||    
T  5791638 agtgtgatttctttgattaaaacatcaagtcccacactcttcaagtcaagagatatgcagatatgtgtttctgacggtgaaaaacaagaaattgtgtggc 5791737  T
Q  205 gtttgtgagtttgcatctcaatctttattgtctgt 239  Q
    ||||||||||||||||||||||||  |||||||||    
T  5791738 gtttgtgagtttgcatctcaatctccattgtctgt 5791772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 5692030 - 5692110
Alignment:
Q  2 ttgattctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagt 82  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5692030 ttgatgctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctttcacaagt 5692110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 5692106 - 5692242
Alignment:
Q  103 caagtgtgatttctttgattaaaacattaagtcccactcttttcaagtcaagaaatatgcagatatgtgtttctaatggtgaaaaacaagaagttgtgtg 202  Q
    ||||||| | ||||||||||||||||| ||||||||| |||||||||||| || |||||||||||||| ||||| | | || ||||||||||| || ||     
T  5692106 caagtgtaacttctttgattaaaacatcaagtcccacccttttcaagtcaggagatatgcagatatgtttttctgacgatggaaaacaagaagctgcgtc 5692205  T
Q  203 gcgtttgtgagtttgcatctcaatctttattgtctgt 239  Q
    || |||||||||||||||||||||||  |||||||||    
T  5692206 gcctttgtgagtttgcatctcaatctccattgtctgt 5692242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 5791569 - 5791633
Alignment:
Q  8 ctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtc 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5791569 ctcaggatgttgaagattctttttatttcttcgtcatcatcagctaccgtatgttctatttggtc 5791633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 51988914 - 51988984
Alignment:
Q  16 gttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagttata 86  Q
    ||||||||| |||||||||||||||||||||||  ||||||| |||| |||||||||  | ||||||||||    
T  51988914 gttgaagatgctttttatttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttata 51988984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 13146726 - 13146798
Alignment:
Q  14 atgttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagttata 86  Q
    |||||||||||  ||||||||||||||||||||||  ||||||| |||| |||||||||  | ||||||||||    
T  13146726 atgttgaagatgatttttatttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttata 13146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 13145732 - 13145662
Alignment:
Q  16 gttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtctctcacaagttata 86  Q
    |||||||||  ||||||||||||||||||||||  ||||||| |||| |||||||||  | ||||||||||    
T  13145732 gttgaagatgatttttatttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttata 13145662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 41490927 - 41490873
Alignment:
Q  18 tgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtc 72  Q
    ||||||| |||||||||||||| ||||||||| ||||||| |||| |||||||||    
T  41490927 tgaagatgctttttatttcttcatcatcatcatctaccatgtgttttatttggtc 41490873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 26379035 - 26378979
Alignment:
Q  16 gttgaagattctttttatttcttcgtcatcatcagctaccatatgttctatttggtc 72  Q
    |||||||||  ||||||||||||||||||||||  ||||||| |||| |||||||||    
T  26379035 gttgaagatgatttttatttcttcgtcatcatcgtctaccatgtgttttatttggtc 26378979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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