View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9693_low_18 (Length: 238)
Name: NF9693_low_18
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 5743298 - 5743144
Alignment:
| Q |
60 |
ggaatcataagtgataaggtatatacctgaagctagattacattgaatctttgcgaaaagtaaggagcagctgcaatggtgctagggatttaaaaattag |
159 |
Q |
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| T |
5743298 |
ggaatcataagtgataaggtatatacctgaagctaaattacattgaatctttgcgaaaagtaaggagcagctgcaattgtgctagggatttaaaaattag |
5743199 |
T |
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| Q |
160 |
ggtttacaagat-tttttgtagcagctgcggcaacaatattgtgaagttagacga |
213 |
Q |
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| T |
5743198 |
ggtttacaagatgtttttgtagcagctgcggcaacaatattttgaagttagacga |
5743144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 5780257 - 5780103
Alignment:
| Q |
60 |
ggaatcataagtgataaggtatatacctgaagctagattacattgaatctttgcgaaaagtaaggagcagctgcaatggtgctagggatttaaaaattag |
159 |
Q |
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| T |
5780257 |
ggaatcataagtgataaggtatatacctgaagctaaattacattgaatctttgcgaaaagtaaggagcagctgcaattgtgctagggatttaaaaattag |
5780158 |
T |
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| Q |
160 |
ggtttacaagat-tttttgtagcagctgcggcaacaatattgtgaagttagacga |
213 |
Q |
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| T |
5780157 |
ggtttacaagatgtttttgtagcagctgcggcaacaatattttgaagttagacga |
5780103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 5750979 - 5750803
Alignment:
| Q |
59 |
tggaatcataagtgataaggtatatacctgaagctagattacatt--------gaatctttgcgaaaagtaag----gagcagctgcaatggtgctaggg |
146 |
Q |
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| T |
5750979 |
tggaatcatacgtgataaggtatatacctggagctagattacattcaatctttgaatctttgcaaaaagtaagtaaggagcggccgcaatggtgctaggg |
5750880 |
T |
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| Q |
147 |
atttaaaaattagggtttacaagat-tttttgtagcagctgcggcaacaatattgtgaagttagacgataaggttta |
222 |
Q |
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| T |
5750879 |
atttaaaaattagggtttagaagatgtttgtgtagcagctgcggcaacaatattgtggagttagacaatacggttta |
5750803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 5787938 - 5787762
Alignment:
| Q |
59 |
tggaatcataagtgataaggtatatacctgaagctagattacatt--------gaatctttgcgaaaagtaag----gagcagctgcaatggtgctaggg |
146 |
Q |
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| T |
5787938 |
tggaatcatacgtgataaggtatatacctggagctagattacattcaatctttgaatctttgcaaaaagtaagtaaggagcggccgcaatggtgctaggg |
5787839 |
T |
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| Q |
147 |
atttaaaaattagggtttacaagat-tttttgtagcagctgcggcaacaatattgtgaagttagacgataaggttta |
222 |
Q |
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| T |
5787838 |
atttaaaaattagggtttagaagatgtttgtgtagcagctgcggcaacaatattgtggagttagacaatacggttta |
5787762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 5691931 - 5691767
Alignment:
| Q |
62 |
aatcataagtgataaggtatatacctgaagc------tagattacattgaatctttgcgaaaagtaaggagcagctg----caatggtgctagggattta |
151 |
Q |
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| T |
5691931 |
aatcataggtgataaggtatatacctgaagcatgtatttgattacattgaatctttgcgaaaagtaaggagcagctgcagccaacagtggtggggattta |
5691832 |
T |
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| Q |
152 |
aaaattagggtttacaagat-tttttgtagcagctgcggcaacaatattgtgaagttagacgata |
215 |
Q |
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| T |
5691831 |
gaaattagggtttacaaaatgttcttgtagcagccgcggcagcagtattgtggatttagatgata |
5691767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 5668177 - 5668014
Alignment:
| Q |
63 |
atcataagtgataaggtatatacctgaagc------tagattacattgaatctttgcgaaaagtaaggagcagctg----caatggtgctagggatttaa |
152 |
Q |
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| T |
5668177 |
atcataggtgataaggtatatacctgaagcatgtatttgattacattgaatctttgcgaaaagtaaggagcagctgcagccaacagtggtggggatttag |
5668078 |
T |
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| Q |
153 |
aaattagggtttacaagat-tttttgtagcagctgcggcaacaatattgtgaagttagacgata |
215 |
Q |
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| T |
5668077 |
aaattagggtttacaaaatgttcttgtagcagccgcggcagcagtattgtggatttagatgata |
5668014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 5791473 - 5791357
Alignment:
| Q |
62 |
aatcataagtgataaggtatatacctgaagc------tagattacattgaatctttgcgaaaagtaaggagcagctg----caatggtgctagggattta |
151 |
Q |
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| T |
5791473 |
aatcataggtgataaggtatatacctgaagcatgtatttgattacattgaatctttgcgaaaagtaaggagcagctgcagccaacagtggtggggattta |
5791374 |
T |
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| Q |
152 |
aaaattagggtttacaa |
168 |
Q |
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| T |
5791373 |
gaaattagggtttacaa |
5791357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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