View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9693_low_19 (Length: 237)
Name: NF9693_low_19
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12221052 - 12220833
Alignment:
| Q |
1 |
tgcttctaagcttggttcctagattagatttagatgtactatcattgttattacttaggctatgtagggagtannnnnnnnnnnnnnnnaagaaatgatg |
100 |
Q |
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| T |
12221052 |
tgcttctaagcttggttcgtagattagatttaggtttactatcattgttattacttaggttatgtagggagtattttttttttatta--aagaaatgatg |
12220955 |
T |
|
| Q |
101 |
ttaactaaacatgggtagctttacacatatttttatcgttggataagtaagaatttccattcgttttgaaccaaaaatgattgtagatatttcttgagtt |
200 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12220954 |
ttaactaa-catgggtagctttacacatctttttatcgttggataagtaagaatttccattcgttttgaaccaaaaatgattgttgatatttcttgagtt |
12220856 |
T |
|
| Q |
201 |
tgcacgaggttcttggccaaaac |
223 |
Q |
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|||||||||||||| |||||||| |
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| T |
12220855 |
tgcacgaggttcttagccaaaac |
12220833 |
T |
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