View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9693_low_2 (Length: 523)
Name: NF9693_low_2
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 163 - 523
Target Start/End: Original strand, 6956441 - 6956815
Alignment:
| Q |
163 |
acaaggtgttttgctaaatcaatagctgacttattatccactaatagtctcattctttcagtttcatttaacttcaaatcttcaagcaacattttaattt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6956441 |
acaaggtgttttgctaaatcaatagctgacttattatccactaatagtctcattctttcagtttcatttaacttcaaatcttcaagcaacattttaattt |
6956540 |
T |
|
| Q |
263 |
aagtccttgacatgctgcaaatgaggttgctaca--------------cacgaggataatgcaactattccttgtttctttgagcactatgagattgaag |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6956541 |
aagtccttgacatgctgcaaatgaggttgctacatactcaacttaacacacgaggataatgcaactattccttgtttctttgagcactatgagattgaag |
6956640 |
T |
|
| Q |
349 |
cttcactaaacatgaataattacccaaatgtacttttttcttcatgaatttgcttacttatcccacaaggaatgtaaaattaggtttgtattgcttaagt |
448 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6956641 |
cttcactaaacgtgaataattacccaaatgtacttttttcttcatgaatttgcttacttatcccacaaggaatgtcaaattaggtttgtattgcttaagt |
6956740 |
T |
|
| Q |
449 |
atctcagtgagcctataattttcttatacaatgtagagtcaactagattctcatcaacatctttgccgagtttga |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6956741 |
atctcagtgagcctataattttcttatacaatgtagagtcaactagattctcatcaacatctttgccgagtttga |
6956815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 19862326 - 19862473
Alignment:
| Q |
18 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaaacccgcgtgaacccatccgtaaacccgcaacccgaaagacccgaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19862326 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaa-cccgcgtgaacccacccgtaaacccgcaacccgaaagacccgaacc |
19862424 |
T |
|
| Q |
118 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19862425 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
19862473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 19871796 - 19871943
Alignment:
| Q |
18 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaaacccgcgtgaacccatccgtaaacccgcaacccgaaagacccgaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19871796 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaa-cccgcgtgaacccacccgtaaacccgcaacccgaaagacccgaacc |
19871894 |
T |
|
| Q |
118 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19871895 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
19871943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 19876697 - 19876844
Alignment:
| Q |
18 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaaacccgcgtgaacccatccgtaaacccgcaacccgaaagacccgaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19876697 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaa-cccgcgtgaacccacccgtaaacccgcaacccgaaagacccgaacc |
19876795 |
T |
|
| Q |
118 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19876796 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
19876844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 19866895 - 19867042
Alignment:
| Q |
18 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaaacccgcgtgaacccatccgtaaacccgcaacccgaaagacccgaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19866895 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaa-cccgcgtgaatccacccgtaaacccgcaacccgaaagacccgaacc |
19866993 |
T |
|
| Q |
118 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19866994 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
19867042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 36585578 - 36585725
Alignment:
| Q |
18 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaaacccgcgtgaacccatccgtaaacccgcaacccgaaagacccgaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36585578 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaa-ccagcgtgaacccacccgtaaacccgcaacccgaaagacccgaacc |
36585676 |
T |
|
| Q |
118 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36585677 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
36585725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 2064156 - 2064009
Alignment:
| Q |
18 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaaacccgcgtgaacccatccgtaaacccgcaacccgaaagacccgaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
2064156 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaa-cccgcgtgaacccacccgtaaaaccgcaacccgaaagacccgaacc |
2064058 |
T |
|
| Q |
118 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaa |
166 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2064057 |
cgtgcaaaccgaagaagaaaagctagtttaaatgggtctgtacacacaa |
2064009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 44497518 - 44497566
Alignment:
| Q |
90 |
taaacccgcaacccgaaagacccgaacccgtgcaaaccgaagaagaaaa |
138 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44497518 |
taaacccgtgacccgaaagacccgaacccgtacaaaccgaagaagaaaa |
44497566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 48580802 - 48580658
Alignment:
| Q |
18 |
agatctgaggtgaggctactgttttttcaaatttctattatgaatcttctcaaacccgcgtgaacccatccgtaaacccgcaacccgaaagacccgaacc |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
48580802 |
agatctgaggtgaggctgctgttttttcaaatttctattatgaatcttctcaa-cccgcgtgaacccacccgtaaatccgcaatccgaaagacccgaacc |
48580704 |
T |
|
| Q |
118 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacaca |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48580703 |
cgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacaca |
48580658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 28994194 - 28994231
Alignment:
| Q |
101 |
cccgaaagacccgaacccgtgcaaaccgaagaagaaaa |
138 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
28994194 |
cccgaaagacccaaacccgtacaaaccgaagaagaaaa |
28994231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University