View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9693_low_21 (Length: 233)

Name: NF9693_low_21
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9693_low_21
NF9693_low_21
[»] chr2 (12 HSPs)
chr2 (1-88)||(11818432-11818519)
chr2 (6-84)||(23379937-23380015)
chr2 (1-84)||(36641423-36641506)
chr2 (1-83)||(20661257-20661339)
chr2 (2-88)||(33650942-33651028)
chr2 (3-83)||(2058774-2058854)
chr2 (1-88)||(11553391-11553478)
chr2 (10-84)||(16206612-16206686)
chr2 (47-88)||(26501264-26501305)
chr2 (1-58)||(27267907-27267964)
chr2 (47-84)||(30848315-30848352)
chr2 (37-93)||(7895972-7896028)
[»] chr1 (11 HSPs)
chr1 (1-84)||(24065277-24065360)
chr1 (1-88)||(3603510-3603597)
chr1 (2-84)||(6507904-6507986)
chr1 (2-88)||(29115476-29115562)
chr1 (1-84)||(41117253-41117336)
chr1 (10-84)||(30033655-30033729)
chr1 (1-83)||(34696097-34696179)
chr1 (6-88)||(5185261-5185343)
chr1 (1-88)||(4614954-4615041)
chr1 (10-83)||(21701467-21701540)
chr1 (47-80)||(28385221-28385254)
[»] chr5 (13 HSPs)
chr5 (1-84)||(2157770-2157853)
chr5 (1-88)||(23622567-23622654)
chr5 (14-84)||(18759792-18759862)
chr5 (2-88)||(29955453-29955539)
chr5 (50-88)||(19237773-19237811)
chr5 (10-84)||(22292452-22292526)
chr5 (2-83)||(13948783-13948864)
chr5 (40-83)||(16088654-16088697)
chr5 (12-83)||(29754948-29755019)
chr5 (1-88)||(36044981-36045068)
chr5 (58-88)||(16569540-16569570)
chr5 (1-83)||(19741524-19741606)
chr5 (56-84)||(7871937-7871965)
[»] chr3 (14 HSPs)
chr3 (1-84)||(16739423-16739506)
chr3 (1-87)||(35906922-35907008)
chr3 (1-88)||(18357172-18357259)
chr3 (5-93)||(36144794-36144882)
chr3 (1-88)||(49499474-49499561)
chr3 (10-84)||(6006028-6006102)
chr3 (47-84)||(4479866-4479903)
chr3 (47-84)||(14485654-14485691)
chr3 (2-83)||(29372946-29373027)
chr3 (10-84)||(8566087-8566161)
chr3 (47-84)||(16877963-16878000)
chr3 (47-80)||(45004299-45004332)
chr3 (43-84)||(53394940-53394981)
chr3 (43-84)||(53437641-53437682)
[»] chr4 (13 HSPs)
chr4 (2-88)||(13686073-13686159)
chr4 (9-88)||(37061038-37061117)
chr4 (10-84)||(30190940-30191014)
chr4 (12-88)||(54027691-54027767)
chr4 (1-84)||(16431348-16431431)
chr4 (2-80)||(16582335-16582413)
chr4 (1-83)||(18878238-18878320)
chr4 (10-84)||(55227685-55227759)
chr4 (40-88)||(4235416-4235464)
chr4 (44-84)||(11790857-11790897)
chr4 (12-88)||(27066335-27066411)
chr4 (12-88)||(27087436-27087512)
chr4 (10-74)||(54823742-54823806)
[»] chr8 (16 HSPs)
chr8 (5-88)||(2246710-2246793)
chr8 (2-84)||(953735-953817)
chr8 (10-80)||(27978818-27978888)
chr8 (10-80)||(28036087-28036157)
chr8 (10-84)||(14505794-14505868)
chr8 (10-84)||(15990403-15990477)
chr8 (10-84)||(37590030-37590104)
chr8 (1-84)||(14657699-14657782)
chr8 (10-84)||(34723846-34723920)
chr8 (10-84)||(35285107-35285181)
chr8 (43-84)||(7670232-7670273)
chr8 (47-84)||(13700129-13700166)
chr8 (47-84)||(22897971-22898008)
chr8 (36-84)||(17837147-17837195)
chr8 (10-74)||(19299024-19299088)
chr8 (56-88)||(19382633-19382665)
[»] chr7 (15 HSPs)
chr7 (1-84)||(13014956-13015039)
chr7 (1-84)||(15633293-15633376)
chr7 (5-88)||(33611022-33611105)
chr7 (10-84)||(30502579-30502653)
chr7 (10-84)||(3896538-3896612)
chr7 (10-84)||(32480288-32480362)
chr7 (10-83)||(41601506-41601579)
chr7 (36-88)||(26016627-26016679)
chr7 (12-88)||(27810611-27810687)
chr7 (25-88)||(48770200-48770263)
chr7 (10-84)||(8118792-8118866)
chr7 (10-84)||(27458211-27458285)
chr7 (10-84)||(47081645-47081719)
chr7 (47-84)||(29961970-29962007)
chr7 (47-88)||(42510026-42510067)
[»] scaffold0341 (2 HSPs)
scaffold0341 (2-84)||(1929-2011)
scaffold0341 (2-84)||(9585-9667)
[»] chr6 (11 HSPs)
chr6 (1-88)||(23508839-23508926)
chr6 (6-77)||(16416670-16416741)
chr6 (5-84)||(34355737-34355816)
chr6 (10-84)||(1493235-1493309)
chr6 (10-88)||(9959300-9959378)
chr6 (2-88)||(13768218-13768304)
chr6 (12-83)||(30140932-30141003)
chr6 (10-84)||(31029201-31029275)
chr6 (9-74)||(187107-187172)
chr6 (42-83)||(35087841-35087882)
chr6 (47-83)||(6695689-6695725)
[»] scaffold0031 (1 HSPs)
scaffold0031 (6-93)||(44546-44633)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-80)||(73335-73414)
[»] scaffold0040 (1 HSPs)
scaffold0040 (10-84)||(62481-62555)
[»] scaffold0643 (1 HSPs)
scaffold0643 (12-83)||(1123-1194)
[»] scaffold0198 (1 HSPs)
scaffold0198 (39-84)||(21815-21860)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11818519 - 11818432
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  11818519 ccacgttactagctagtcccgttatttattttcagatacccaattatattgaacctcttattattaatgaaatgctataagcatattt 11818432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 23379937 - 23380015
Alignment:
Q  6 ttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||| ||| |||||||| | | |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  23379937 ttactagctagttccgctgtttattttaaaatacccaattgtattgaaactattattattaatgaaatgttataagcat 23380015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 36641423 - 36641506
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||| ||||||||||||||||||||||||| | | ||||||||||||||||||  ||||||||| ||||||||  |||||||||    
T  36641423 ccacattactagctagtcccgttgtttattttgagatacccaattatattgaaattattattatcaatgaaatactataagcat 36641506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20661257 - 20661339
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    ||||||||||||||||||||| ||| |||| | |||||||||||| ||||||| || | ||||| ||||||||| ||||||||    
T  20661257 ccacgttactagctagtcccgctgtctattatgacatacccaattgtattgaatctttgattatcaatgaaatgctataagca 20661339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 33650942 - 33651028
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||| |||||||||||||||||||||| | |||||||||||  |||||||  | ||||||||||||||||| | ||| |||||||    
T  33650942 cacgtttctagctagtcccgttgtttattttaacatacccaatcgtattgaatatcttattattaatgaaatgctctaaacatattt 33651028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 2058774 - 2058854
Alignment:
Q  3 acgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||||| |||||| ||||| |||||||| | | |||||||||| ||||||| || ||||||| ||| ||||||||||||||    
T  2058774 acgttattagctaatcccgctgtttattatgatatacccaattgtattgaaactcttattatcaattaaatgttataagca 2058854  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11553391 - 11553478
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||| |||||||||||||||    |||||| ||| |||||| | ||||||||| || ||||||||||||||||  |||||||||||||    
T  11553391 ccacattactagctagtcccaccatttattttcatatacccgaatatattgaaactcttattattaatgaaatactataagcatattt 11553478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 16206612 - 16206686
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  16206612 tagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 16206686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 26501305 - 26501264
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||||||||||||||| ||||||||| ||||| |||||||    
T  26501305 tattgaacctattattataaatgaaatgctataaacatattt 26501264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27267964 - 27267907
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctat 58  Q
    |||||||||||| ||||||| ||||||||| | | |||||||||| ||||||| ||||    
T  27267964 ccacgttactagttagtcccattgtttattatgaaatacccaattgtattgaaactat 27267907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 30848315 - 30848352
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  30848315 tattgaatctattattattaatgaaatgctataagcat 30848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 7896028 - 7895972
Alignment:
Q  37 tacccaattatattgaacctattattattaatgaaatgttataagcatatttgcttt 93  Q
    ||||| ||| ||||||  || |||||| |||||||||||||||||||||||| ||||    
T  7896028 tacccgattgtattgactctgttattactaatgaaatgttataagcatattttcttt 7895972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 24065277 - 24065360
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| |||||||| | ||||||||||||||||| |||||||||    
T  24065277 ccacgttactagctagtcccgttgtttattttcacatacccgattgtattgaacttcttattattaatgaaatgctataagcat 24065360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3603597 - 3603510
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||||||||||| |||||||||||||| ||| |||| | ||| |||||||||| ||||||||||||||||||||||| |||||||    
T  3603597 ccacgttactagctactcccgttgtttattttcatatacacgattgtattgaacctcttattattaatgaaatgttataaacatattt 3603510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 6507986 - 6507904
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||||||| | ||||||||| | | |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  6507986 cacgttactagctagtctctttgtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 6507904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 29115476 - 29115562
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||||||||||||||  |||||||||| ||| |||||| ||| ||| |||||| |||||||||||| |||| |||||||||||||    
T  29115476 cacgttactagctagtcatgttgtttattttcatatacccgattgtatggaacctcttattattaatgcaatgatataagcatattt 29115562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 41117253 - 41117336
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||||||||||   ||||||| | | |||||||||| |||| || |||||||||| ||||||||| |||||||||    
T  41117253 ccacgttactagctagtcccaccgtttattttgagatacccaattgtattcaaactattattatcaatgaaatgctataagcat 41117336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 30033655 - 30033729
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||||||||||||||||| || ||||||| ||||||||| |||||||||    
T  30033655 tagctagtcccgccgtttattttaatatacccaattatattgaaactcttattataaatgaaatgctataagcat 30033729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34696179 - 34696097
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    ||||||| |||||||||| ||||||||||| ||| |||||| ||| ||||||| || | ||||||||||| ||| ||||||||    
T  34696179 ccacgtttctagctagtctcgttgtttattttcatataccccattgtattgaaactttgattattaatgatatgatataagca 34696097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 5185343 - 5185261
Alignment:
Q  6 ttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||| |||||||||||   |||||| | | |||||| | |||||||||  | |||||||||||||||||||||||||||||||    
T  5185343 ttaccagctagtcccgccatttatttttatatacccgaatatattgaatatcttattattaatgaaatgttataagcatattt 5185261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4614954 - 4615041
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||| ||| ||||| |||||||| ||| | ||||| || ||| ||||||| ||  ||||||||||||||| |||||| |||||||    
T  4614954 ccacgtttctaactagttccgttgttgattttaacataaccgattgtattgaatctcgtattattaatgaaattttataaacatattt 4615041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 21701540 - 21701467
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    ||||||||||||  ||||||| | | |||| ||||| ||||||| || |||| |||||||||||| ||||||||    
T  21701540 tagctagtcccgccgtttattatgatatactcaattgtattgaaactcttatgattaatgaaatgctataagca 21701467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 28385221 - 28385254
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataa 80  Q
    ||||||| ||||||||||||||||||||||||||    
T  28385221 tattgaaactattattattaatgaaatgttataa 28385254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2157853 - 2157770
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||||||||||||||||||||| | | |||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  2157853 ccacgttactagctagtcccgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaatgctataagcat 2157770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23622567 - 23622654
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||| |||||||||| ||||||||||| | |||||||| ||| ||||||| || ||||||||||||||||| |||||||||||||    
T  23622567 ccacgtttctagctagtctcgttgtttattttaacatacccgattgtattgaatctcttattattaatgaaatgctataagcatattt 23622654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 18759792 - 18759862
Alignment:
Q  14 tagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||  ||||||| | | |||||||||||||||||| || ||||||||||||||||| |||||||||    
T  18759792 tagtcccgccgtttattttgatatacccaattatattgaaacttttattattaatgaaatgctataagcat 18759862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 29955539 - 29955453
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||| ||| |||||| | ||||||||| | |||||||  ||| ||||||| || ||||||||||||||||||||||| |||||||    
T  29955539 cacgtttctaactagtctcattgtttattttaacatacctgattgtattgaatcttttattattaatgaaatgttataatcatattt 29955453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 19237773 - 19237811
Alignment:
Q  50 tgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  19237773 tgaacctcttattattaatgaaatgttataagcatattt 19237811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 22292452 - 22292526
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  22292452 tagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 22292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 13948864 - 13948783
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||||| ||||||||| |||||||||||| ||| |||||| ||| ||||||| || | ||||||| ||| ||| ||||||||    
T  13948864 cacgtttctagctagttccgttgtttattttcatataccctattgtattgaaactttgattattattgatatgctataagca 13948783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 16088654 - 16088697
Alignment:
Q  40 ccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||    
T  16088654 ccaattatattgaaactattatgattaatgaaatgctataagca 16088697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 29755019 - 29754948
Alignment:
Q  12 gctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||||||||| | | |||| ||| |||||||||| ||||||| || | ||||||||||||||| ||||||||    
T  29755019 gctagtcccgctatctattttcatatacccaattgtattgaaactttgattattaatgaaatgctataagca 29754948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 36044981 - 36045068
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||| |||||||||||||||    |||||| ||| || ||| | | ||||||| || ||||||||||||||||| |||||||||||||    
T  36044981 ccacattactagctagtcccaccatttattttcatatgcccgaatgtattgaatctcttattattaatgaaatgctataagcatattt 36045068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 16569570 - 16569540
Alignment:
Q  58 ttattattaatgaaatgttataagcatattt 88  Q
    |||||||||||||||||||||||||||||||    
T  16569570 ttattattaatgaaatgttataagcatattt 16569540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 19741606 - 19741524
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||| |||||||||||||||| |||||||  | | ||||  | || ||||||| || ||||||| ||||||||||||||||||    
T  19741606 ccacattactagctagtcccgctgtttatcatgaaatacatatttgtattgaaactcttattatcaatgaaatgttataagca 19741524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 7871965 - 7871937
Alignment:
Q  56 tattattattaatgaaatgttataagcat 84  Q
    |||||||||||||||||||||||||||||    
T  7871965 tattattattaatgaaatgttataagcat 7871937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16739506 - 16739423
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||||||||||||||||||||| | | |||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  16739506 ccacgttactagctagtcccgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaatgctataagcat 16739423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 35907008 - 35906922
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatatt 87  Q
    ||||||||||||||||||||| |||||||| | | |||||||||| ||||||| |||| ||||| ||||||||| ||||||||||||    
T  35907008 ccacgttactagctagtcccgctgtttattttgagatacccaattgtattgaaactatcattatcaatgaaatgctataagcatatt 35906922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 18357172 - 18357259
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||||||||||| | |||||||||||| | | |||||| | ||||||||| || |||||||| |||||||| |||||||||||||    
T  18357172 ccacgttactagctaattccgttgtttattttgatatacccgaatatattgaatctcttattattcatgaaatgctataagcatattt 18357259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 36144794 - 36144882
Alignment:
Q  5 gttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatatttgcttt 93  Q
    ||||||| ||||||||  | |||||| ||| |||||| ||| |||||||||| || |||||||||||||| ||||||||||||| ||||    
T  36144794 gttactaactagtcccactatttattttcatatacccgattgtattgaacctcttgttattaatgaaatgctataagcatattttcttt 36144882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 49499474 - 49499561
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||| |||||||||| |||| |||||| | ||||| || ||| ||||||| || ||||||||||||||||| ||||| |||||||    
T  49499474 ccacgtttctagctagtctcgttatttattttaacatatccgattgtattgaatctcttattattaatgaaatgctataaacatattt 49499561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 6006102 - 6006028
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  6006102 tagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 6006028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 4479903 - 4479866
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4479903 tattgaatctattattattaatgaaatgttataagcat 4479866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 14485654 - 14485691
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||||||||||||||||||| |||||||||    
T  14485654 tattgaacctattattattaatgaaatgctataagcat 14485691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 29373027 - 29372946
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||||||||||||||||| |||||||||| | |  ||||| | | ||||||| || ||||||| ||||||||| ||||||||    
T  29373027 cacgttactagctagtccggttgtttattttaatttacccgaatgtattgaaactcttattatcaatgaaatgctataagca 29372946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 8566087 - 8566161
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||| ||| |||| | | |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  8566087 tagctagtcccgctgtctattatgatatacccaattgtattgagactattatgatcaatgaaatgctataagcat 8566161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 16878000 - 16877963
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  16878000 tattgaaactattattattaatgaaatgctataagcat 16877963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 45004299 - 45004332
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataa 80  Q
    |||||||||||||||||||||||||||| |||||    
T  45004299 tattgaacctattattattaatgaaatgctataa 45004332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 53394940 - 53394981
Alignment:
Q  43 attatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||| || ||||||||||||||||| |||||||||    
T  53394940 attatattgaaactcttattattaatgaaatgctataagcat 53394981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 53437641 - 53437682
Alignment:
Q  43 attatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||| || ||||||||||||||||| |||||||||    
T  53437641 attatattgaaactcttattattaatgaaatgctataagcat 53437682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 13686073 - 13686159
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||||||||||||||| ||||||||| ||| |||||| ||| ||||||| || ||||||||||||||||| |||||||||||||    
T  13686073 cacgttactagctagtcccattgtttattttcatatacccgattgtattgaatctcttattattaatgaaatgctataagcatattt 13686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 37061117 - 37061038
Alignment:
Q  9 ctagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||||||||||||||||||| | |||||||| ||| ||||||| || |||||||||| ||||||||||||||||||||    
T  37061117 ctagctagtcccgttgtttattttaacatacccgattgtattgaatctcttattattaacgaaatgttataagcatattt 37061038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 30191014 - 30190940
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | ||| |||||| ||||||| || |||||||||||||||||||||||||||    
T  30191014 tagctagtcccgccgtttattttgatatatccaattgtattgaaactcttattattaatgaaatgttataagcat 30190940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 54027767 - 54027691
Alignment:
Q  12 gctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||| ||||| | |||||| ||| |||||||||||||||||| || | ||||||||||||||| |||||||| ||||    
T  54027767 gctactcccgctatttattttcatatacccaattatattgaaactttgattattaatgaaatgatataagcacattt 54027691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16431431 - 16431348
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||| || ||||| |||||||| | | |||| || || |||||||  | |||||||||||||||||||||||||||    
T  16431431 ccacgttactagttactcccgctgtttattttgaaatactcagttgtattgaaattcttattattaatgaaatgttataagcat 16431348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 16582413 - 16582335
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataa 80  Q
    |||||||||||||||||||   ||||||| | | ||||||| || ||||||| |||||||||||||||| ||| |||||    
T  16582413 cacgttactagctagtcccaccgtttattttgaaatacccagttgtattgaaactattattattaatgatatgctataa 16582335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 18878238 - 18878320
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||||||  |||||| || ||| ||||||| | | ||||||| || ||||||| |||||||||||||||||||| ||||||||    
T  18878238 ccacgtttttagctaatctcgtcgtttattatgatatacccacttgtattgaaactattattattaatgaaatgctataagca 18878320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 55227685 - 55227759
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  55227685 tagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 55227759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 4235416 - 4235464
Alignment:
Q  40 ccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||| ||||||  ||||||| |||||||||||| |||||||||||||    
T  4235416 ccaattgtattgagactattatgattaatgaaatgctataagcatattt 4235464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 11790857 - 11790897
Alignment:
Q  44 ttatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  11790857 ttatattgaacagattattattaatgaaatgtaataagcat 11790897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 27066411 - 27066335
Alignment:
Q  12 gctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||||||| | | |||| ||| |||| ||||| ||||||| || | ||||||||||||||| |||||||| ||||    
T  27066411 gctagtcccgctatctattttcatatactcaattgtattgaaactttgattattaatgaaatgctataagcacattt 27066335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 27087512 - 27087436
Alignment:
Q  12 gctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||||||| | | |||| ||| |||| ||||| ||||||| || | ||||||||||||||| |||||||| ||||    
T  27087512 gctagtcccgctatctattttcatatactcaattgtattgaaactttgattattaatgaaatgctataagcacattt 27087436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 54823742 - 54823806
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatg 74  Q
    ||||||||||||  ||||||| | | |||||||||| |||||||  | |||||||||||||||||    
T  54823742 tagctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatg 54823806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 2246793 - 2246710
Alignment:
Q  5 gttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||||||||||  |||||||||| |||||||||  ||| |||||||||| ||||||||||||||||| |||||||||||||    
T  2246793 gttactagctagtcatgttgtttattttcacatacctgattgtattgaacctcttattattaatgaaatgctataagcatattt 2246710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 953735 - 953817
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||||||||||||||||||| ||||||| | |||| |||||||||| ||||||||||| ||||| ||| |||||    
T  953735 cacgttactagctagtcccgttgtttattttcacatatctaattgtattgaacctcttattattaataaaatgctatgagcat 953817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 27978818 - 27978888
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataa 80  Q
    ||||||||||| | ||||||| | | |||||||||| ||||||| ||||||| ||||||||||||||||||    
T  27978818 tagctagtcccttcgtttattatgatatacccaattttattgaaactattatgattaatgaaatgttataa 27978888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 28036087 - 28036157
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataa 80  Q
    ||||||||||| | ||||||| | | |||||||||| ||||||| ||||||| ||||||||||||||||||    
T  28036087 tagctagtcccttcgtttattatgatatacccaattttattgaaactattatgattaatgaaatgttataa 28036157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 14505794 - 14505868
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  14505794 tagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 14505868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 15990477 - 15990403
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  15990477 tagctagtcccgccgtttattttaatatacccaattgtattgaaactcttattataaatgaaatgctataagcat 15990403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 37590104 - 37590030
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||| |||  ||||||| | | |||||||||| ||||||| || ||||||||||||||||| |||||||||    
T  37590104 tagctagttccgccgtttattttaatatacccaattgtattgaaactcttattattaatgaaatgctataagcat 37590030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 14657782 - 14657699
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||| |||| | ||||||||| | | ||||| |||| ||||||| || |||| || ||||||||| |||||||||    
T  14657782 ccacgttactagccagtcacattgtttattttgatatacctaattgtattgaaactcttataatcaatgaaatgctataagcat 14657699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 34723920 - 34723846
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||| ||  ||||||| | | |||||||||| ||||||| ||||||| |||||||||||| | |||||||    
T  34723920 tagctagtctcgccgtttattatgatatacccaattgtattgaatctattatgattaatgaaatgctctaagcat 34723846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 35285107 - 35285181
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||| ||| |||| | | |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  35285107 tagctagtcccgctgtctattatgatatacccaattgtattgaggctattatgatcaatgaaatgctataagcat 35285181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 7670273 - 7670232
Alignment:
Q  43 attatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||| |||||||||||||||||||| |||| ||||    
T  7670273 attatattgaatctattattattaatgaaatgatatacgcat 7670232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 13700166 - 13700129
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  13700166 tattgaaactattattattaatgaaatgctataagcat 13700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 22897971 - 22898008
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  22897971 tattgaaactattattattaatgaaatgctataagcat 22898008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 17837195 - 17837147
Alignment:
Q  36 atacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||| ||||||||||| || | ||||||||||||||| |||||||||    
T  17837195 atacccgattatattgaatctttaattattaatgaaatgctataagcat 17837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 19299088 - 19299024
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatg 74  Q
    ||||||||||||  ||||||| | | |||||||||| |||||||  | |||||||||||||||||    
T  19299088 tagctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatg 19299024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 19382665 - 19382633
Alignment:
Q  56 tattattattaatgaaatgttataagcatattt 88  Q
    ||||||||||||||||||| |||||||||||||    
T  19382665 tattattattaatgaaatgctataagcatattt 19382633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13015039 - 13014956
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||||||||| |||||||||| | | |||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  13015039 ccacgttactagctagtcctgttgtttattttgagatacccaattgtattgaaactattattatcaatgaaatgctataagcat 13014956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 15633293 - 15633376
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||||||||||||||||||| | | | |||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  15633293 ccacgttactagctagtcccgttgtttactttgaaatacccaattgtattgaaactattattatcaatgaaatgctataagcat 15633376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 33611105 - 33611022
Alignment:
Q  5 gttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||||||| ||||||||||||||| ||| |||||| ||| |||||||||| ||||||||||| ||||| |||||||||||||    
T  33611105 gttactagctggtcccgttgtttattttcatatacccgattgtattgaacctcttattattaataaaatgctataagcatattt 33611022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 30502579 - 30502653
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||||| ||| ||||||| || |||||||||||||||||||||||||||    
T  30502579 tagctagtcccgcagtttattttgatatacccgattgtattgaaactcttattattaatgaaatgttataagcat 30502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 3896538 - 3896612
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||||| ||| ||||||| || ||||||||||||||||| |||||||||    
T  3896538 tagctagtcccgccgtttattttgatatacccgattgtattgaaactcttattattaatgaaatgctataagcat 3896612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 32480288 - 32480362
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  ||||||| | | |||| ||||| ||||||| || ||||||||||||||||| |||||||||    
T  32480288 tagctagtcccgcagtttattttaatatactcaattgtattgaaactcttattattaatgaaatgctataagcat 32480362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 41601506 - 41601579
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||||||||||| |||||||| | | |||||||||| ||||||| ||||||| || | ||||||| ||||||||    
T  41601506 tagctagtcccgctgtttattatgatatacccaattgtattgaaactattatgatgagtgaaatgctataagca 41601579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 26016627 - 26016679
Alignment:
Q  36 atacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||||||| |||||||  | ||||||||||||||||| |||||||||||||    
T  26016627 atacccaattgtattgaatatcttattattaatgaaatgctataagcatattt 26016679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 27810611 - 27810687
Alignment:
Q  12 gctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||| || |||||||| | | ||||||| || ||||||| |||||||||| ||||||||  |||||||||||||    
T  27810611 gctagtctcgctgtttattttaatatacccagttgtattgaaactattattataaatgaaattctataagcatattt 27810687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 48770200 - 48770263
Alignment:
Q  25 tttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||||| ||| |||||| | | ||||||| || ||||||||||||||||| |||||||||||||    
T  48770200 tttattttcatatacccgaatgtattgaaactcttattattaatgaaatgctataagcatattt 48770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 8118866 - 8118792
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||| ||| |||| | | |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  8118866 tagctagtcccgctgtctattatgatatacccaattgtattgagactattatgatcaatgaaatgctataagcat 8118792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 27458211 - 27458285
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||  |||| ||||||| | |||||||||||| ||||||| | ||||||||||||||| || | |||||||    
T  27458211 tagctagctccgtagtttattatgacatacccaattgtattgaatccattattattaatgaattgctttaagcat 27458285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 47081719 - 47081645
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||| ||| |||| | | |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  47081719 tagctagtcccgctgtctattatgatatacccaattgtattgagactattatgatcaatgaaatgctataagcat 47081645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 29961970 - 29962007
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  29961970 tattgaatctattattattaatgaaatgctataagcat 29962007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 42510067 - 42510026
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||    
T  42510067 tattgaaactattatcattaatgaaatgttataagcacattt 42510026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 2011 - 1929
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||||||| | ||||||||| | | |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  2011 cacgttactagctagtctctttgtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 1929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 9667 - 9585
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||||||| | ||||||||| | | |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  9667 cacgttactagctagtctctttgtttattttaatatacccaaatgtattgaacctgttattattaatgaaatgttataagcat 9585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 23508926 - 23508839
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    |||| |||| |||||||||||||||||| | |||||||||  ||| |||||||||| |||||||||||||||||  ||||||||||||    
T  23508926 ccacattacgagctagtcccgttgtttaatttcacatacctgattgtattgaacctcttattattaatgaaatgcaataagcatattt 23508839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 16416670 - 16416741
Alignment:
Q  6 ttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgtta 77  Q
    ||||||||||||| | || |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||    
T  16416670 ttactagctagtctcattatttattttcatatacccaattgtattgaacctcttattattaatgaaatgtta 16416741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 34355816 - 34355737
Alignment:
Q  5 gttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||||||| |||||||| | | |||||||||| ||||||| || ||||||| ||||||||| |||||||||    
T  34355816 gttactagctagtcccgctgtttattttgatatacccaattgtattgaaactcttattatcaatgaaatgctataagcat 34355737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 1493309 - 1493235
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||||||||  |||||||   | |||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  1493309 tagctagtcccgccgtttatttcgatatacccaattatattgaaactattattatcaatgaaatgctataagcat 1493235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 9959300 - 9959378
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||||||||  ||||||| | | |||||||||| ||||||  ||||||| |||||||||||| |||||||| ||||    
T  9959300 tagctagtcccgccgtttattatgatatacccaattgtattgagactattatgattaatgaaatgctataagcacattt 9959378  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 13768218 - 13768304
Alignment:
Q  2 cacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatattt 88  Q
    ||||||||||| ||||   |||||||||| | | |||||| ||| ||||||| || ||||||||||| ||||| |||||||||||||    
T  13768218 cacgttactagttagttttgttgtttatttttatatacccgattgtattgaatctcttattattaatcaaatgctataagcatattt 13768304  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 30141003 - 30140932
Alignment:
Q  12 gctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||||||||| | | |||| ||| |||||||||| ||||||| || | ||||||||||||||| ||||||||    
T  30141003 gctagtcccgctatctattttcatatacccaattgtattgaaactttgattattaatgaaatgctataagca 30140932  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 31029201 - 31029275
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||| ||| |||| | | |||||||||| ||||||  ||||||| || ||||||||| |||||||||    
T  31029201 tagctagtcccgctgtctattatgatatacccaattgtattgagactattatgatcaatgaaatgctataagcat 31029275  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 187107 - 187172
Alignment:
Q  9 ctagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatg 74  Q
    ||||||||||  ||| |||||| | ||||| |||||| ||||||| || |||||||||||||||||    
T  187107 ctagctagtcttgttatttattttaacatatccaattgtattgaatctcttattattaatgaaatg 187172  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 35087882 - 35087841
Alignment:
Q  42 aattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||| ||||||| | |||||||||||||||||||||||||||    
T  35087882 aattgtattgaaacgattattattaatgaaatgttataagca 35087841  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 6695689 - 6695725
Alignment:
Q  47 tattgaacctattattattaatgaaatgttataagca 83  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  6695689 tattgaaactattatcattaatgaaatgttataagca 6695725  T

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Target: scaffold0031 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 44546 - 44633
Alignment:
Q  6 ttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcatatttgcttt 93  Q
    |||||||||| ||| |||||||||| | | |||||| ||| |||||||||| ||||||||||||||||  |||||| |||||| ||||    
T  44546 ttactagctaatcctgttgtttattttaatatacccgattgtattgaacctcttattattaatgaaattctataaggatatttccttt 44633  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 73414 - 73335
Alignment:
Q  1 ccacgttactagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataa 80  Q
    ||||||| |||||||||||||||||||| | | | |||||||||| ||||||| || | ||||||||||| |||||||||    
T  73414 ccacgtttctagctagtcccgttgtttacttttatatacccaattgtattgaaactttgattattaatgatatgttataa 73335  T

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Target: scaffold0040 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 62555 - 62481
Alignment:
Q  10 tagctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    |||||||||||| |||||||| | | |||| ||||| ||||||| || ||||||||||||||||| |||||||||    
T  62555 tagctagtcccgctgtttattttaatatactcaattgtattgaaactcttattattaatgaaatgctataagcat 62481  T

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Target: scaffold0643 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 1123 - 1194
Alignment:
Q  12 gctagtcccgttgtttattgtcacatacccaattatattgaacctattattattaatgaaatgttataagca 83  Q
    |||||||||| | |||||| ||| |||||||||| |||||||  | | ||||||||||||||| ||||||||    
T  1123 gctagtcccgctatttattttcatatacccaattgtattgaatgtttgattattaatgaaatgctataagca 1194  T

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Target: scaffold0198 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 21860 - 21815
Alignment:
Q  39 cccaattatattgaacctattattattaatgaaatgttataagcat 84  Q
    ||||||| ||||||| || ||||||| |||||||||||||||||||    
T  21860 cccaattgtattgaatctcttattataaatgaaatgttataagcat 21815  T

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