View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9693_low_5 (Length: 378)
Name: NF9693_low_5
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 47686003 - 47686356
Alignment:
| Q |
9 |
gagaagaaaaagaagcaattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaagtaagtattt |
108 |
Q |
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| T |
47686003 |
gagaacaaaaagaagcaattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtatcatggaaactaaaacaagtaagtattt |
47686102 |
T |
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| Q |
109 |
cgatatggaaggcaaaacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaagtgtggccattgatggtgattcgcgt |
208 |
Q |
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| T |
47686103 |
cgatatggaaggcaaaacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaagtgtggccattgatggtgattcgcgt |
47686202 |
T |
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| Q |
209 |
aagaagtttgctgaaaagagtgtgaaagtaatgaatgaatcaagtagtagaagggatgttaatgacactatctatggtttggttcagtgtacaccagatt |
308 |
Q |
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| T |
47686203 |
aagaagtttgctgaaaagagtgtgaaagtaatgaatgaatcaagtagtagaagtgatgttaatgacactatttatggtttggttcagtgtacaccagatt |
47686302 |
T |
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| Q |
309 |
tgtctaaacaagaatgtactgaatgtttggattcggctttcgggaatttttcaa |
362 |
Q |
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| T |
47686303 |
tgtctaaacaagaatgtactgaatgtttggattcggctttcgggaatttttcaa |
47686356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 47673895 - 47674231
Alignment:
| Q |
15 |
aaaaagaagcaattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaagtaagtatttcgatat |
114 |
Q |
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| T |
47673895 |
aaaaagaagcaattggttacttcgacttgtgtagtttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaagtaattatttcaatat |
47673994 |
T |
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| Q |
115 |
ggaaggcaaaacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaagtgtggccattgatggtgattcgcgtaagaag |
214 |
Q |
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| T |
47673995 |
caaagctaatacaagggcggatgatgcatttaatcaaacacttcttgatttgttggatgaacttaaaaccgtggccgctgatggtgattcgcgtaagaag |
47674094 |
T |
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| Q |
215 |
tttgctgaaaagagtgtgaaagtaatgaatgaatcaagtagtagaagggatgttaatgacactatctatggtttggttcagtgtacaccagatttgtcta |
314 |
Q |
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| T |
47674095 |
tttgctgaaaagagtgtgaaagtaattgatgaatcaagtagtagtagtaatactaatgacacaatttatggtttggttcagtgtacaccggatctgtcta |
47674194 |
T |
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| Q |
315 |
aacaagaatgtactgaatgtttggattcggctttcgg |
351 |
Q |
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| T |
47674195 |
agcaagaatgtaatgaatgtttagattcggctttcgg |
47674231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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