View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9693_low_6 (Length: 374)
Name: NF9693_low_6
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 9680203 - 9680565
Alignment:
| Q |
1 |
acattggattggtgaattgaacaatttagagatattgaaactttcttctaatagattttatggtcaaattccatttggcattggtggtcttagaagtttg |
100 |
Q |
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| T |
9680203 |
acattggattggtgaattgaacaatttagagatattgaaactttcttctaatagattttatggtcaaattccatttggcattggtggtcttagaagtttg |
9680302 |
T |
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| Q |
101 |
caagttttgaatttttctgcaaacaatatttcgggttctattccagtgagtataagagagcttaaatctttgtatattcttgatttgagttctaacaagc |
200 |
Q |
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| T |
9680303 |
caagttttgaatttttctgcaaacaatatttcgggttctattccagtgagtataagagagcttaaatctttgtatactcttgatctaagtgataacaagc |
9680402 |
T |
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| Q |
201 |
ttaatggaagcattccttatgaaatagaaggagcaatttcacttagtgagttaaggctgcaaaggaatttcttaggtggaagaattccagtccaaattgg |
300 |
Q |
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| T |
9680403 |
ttaatggaagcattccttatgaaatagaaggagcaatttcacttagtgagttgaggctacaaaggaatttcttaggtggaagaattccagtccaaattgg |
9680502 |
T |
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| Q |
301 |
aaaatgttcagcgttaacatctttgtaagttcttcttcatagtttacatcattcatgccctat |
363 |
Q |
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| T |
9680503 |
aaaatgttcagaactaacatctttgtaagttcttcttcatagtttacatcattcatgccctat |
9680565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 55 - 333
Target Start/End: Complemental strand, 27379350 - 27379072
Alignment:
| Q |
55 |
attttatggtcaaattccatttggcattggtggtcttagaagtttgcaagttttgaatttttctgcaaacaatatttcgggttctattccagtgagtata |
154 |
Q |
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| T |
27379350 |
attttctggtgaaattccatctgatattggtggtcttagtagtttgaaaatctggaatatgtctaccaactatttctctggttctgttcctgttggtata |
27379251 |
T |
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| Q |
155 |
agagagcttaaatctttgtatattcttgatttgagttctaacaagcttaatggaagcattccttatgaaatagaaggagcaatttcacttagtgagttaa |
254 |
Q |
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| || || |||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||| ||||||| |||||||||||| |||| || | |
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| T |
27379250 |
ggcgaactcaaatctttgtgcattgttgatttgagtgataacaagcttaatggaagcattccttttgaattagaaggtgcaatttcacttggtgaattga |
27379151 |
T |
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| Q |
255 |
ggctgcaaaggaatttcttaggtggaagaattccagtccaaattggaaaatgttcagcgttaacatctttgtaagttct |
333 |
Q |
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| T |
27379150 |
ggctacagaagaattccattggtgggagaattccggatcaaatcgcgaagtgctcggctctaacatctttgtaagttct |
27379072 |
T |
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