View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9693_low_8 (Length: 338)
Name: NF9693_low_8
Description: NF9693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9693_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 1959382 - 1959687
Alignment:
| Q |
17 |
agtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1959382 |
agtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttaccgttcatcatctctattgctatccttca |
1959481 |
T |
|
| Q |
117 |
gattttgattttagacatagaaatggtctatcattttgactttgaaggaagaataaggcgtcctatgtaaacaagtagtcaaaactatactagatcggtc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1959482 |
gattttgattttagacatagaaatggtctatcattttgactttgaagaaagaataaggcgtcctatgtaaacaagtagtcaaaactatactagattggtc |
1959581 |
T |
|
| Q |
217 |
gaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatcttaatc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1959582 |
gaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatcttaatc |
1959681 |
T |
|
| Q |
317 |
tctgct |
322 |
Q |
| |
|
||||| |
|
|
| T |
1959682 |
actgct |
1959687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 2024130 - 2023834
Alignment:
| Q |
17 |
agtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttca |
116 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2024130 |
agtttcttcaaagttaactttggttgacattttctctatctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttca |
2024031 |
T |
|
| Q |
117 |
gattttgattttagacatagaaatggtctatcattttgactttgaa-ggaagaataaggcgtcctatgtaaacaagtagtcaaaactatactagatcggt |
215 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
2024030 |
gattttgattttaaacatagaaatgatctaccattttgattttgaagggaagaataaggtgtcctatgcaaacaagtagtcaaaactatactagatcagt |
2023931 |
T |
|
| Q |
216 |
cgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatcttaat |
315 |
Q |
| |
|
| | ||||||||| |||| ||||||||| || |||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2023930 |
caagttgggaatcagtctgccctataatcggg---tacatgatgttcacaaggttcttgtagtcctcaagaaaataggtttgtatccctataatcttaat |
2023834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University