View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9694_1 (Length: 796)
Name: NF9694_1
Description: NF9694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9694_1 |
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Alignment Details
Target: chr1 (Bit Score: 696; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 23 - 769
Target Start/End: Original strand, 45887672 - 45888431
Alignment:
| Q |
23 |
tcatttggagtcaccagcacaacacacagaattcatcacttctggtcaccttcttctctttttcctttctgtcactatcagtcaaataaaaactttctta |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45887672 |
tcatttggagtcaccagcacaacacacagaattcatcacttctggtcaccttcttctctttttcctttctgtcactatcagtcaaataaaaactttctta |
45887771 |
T |
|
| Q |
123 |
tccaaatattaatactatatttgtaaatctagaagttgccaccttgggaaacaaagccacacgtgtcacacataaactttctgacaaaacctcttttgct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45887772 |
tccaaatattaatactatatttgtaaatctagaagttgccaccttgggaaacaaagccacacgtgtcacacacaaactttctgacaaaacctcttttgct |
45887871 |
T |
|
| Q |
223 |
aacccaaaataaacccatgtcccacattcaattccttaaccatagtacataccgtgggaaaacactgagctgtcttctcctcattgacagaacactacac |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45887872 |
aacccaaaataaacccatgtcccacattcaattccttaaccatagtacataccgtgggaaaacactgagctgtcttctcctcattgacagaacactacac |
45887971 |
T |
|
| Q |
323 |
cttcgccatgtcactttcctcgttacctcacttcatttttccattctttatatatacatctttcaacttacacactttccctctcaaaataacacacaca |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45887972 |
cttcgccatgtcactttcctcgttacctcacttcatttttccattctttatatatacatctttcaacttacacactttccctctcaaaacaacacacaca |
45888071 |
T |
|
| Q |
423 |
aaaattactaccaaagtaccaagtacttactaaccacactgtttttcaactactagaattataacaaactttccttctacta-------------ttttt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
45888072 |
aaaattactaccaaagtaccaagtacttactaaccacactgtttttcaactagtagaattataacaaactttccttctactattcttttttttttttttt |
45888171 |
T |
|
| Q |
510 |
tggaacatgtttactatgaatcaattttcggattcacatgatccatgttcatcatcttcagagaggtttcttgcagagaccatgccaaagaagcgtgcag |
609 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45888172 |
tggaacatgtttactatgaatcaattttcggagtcacatgatccatgttcatcatcttcagagaggtttcttgcagagaccatgccaaagaagcgtgcag |
45888271 |
T |
|
| Q |
610 |
ggaggaagaagttcagagaaacacgccaccctgtgtaccgtggtgtaagaaagagggattccgggaagtgggtttgcgaagtaagagaacctaacaagaa |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45888272 |
ggaggaagaagttcagagaaacacgccaccctgtgtaccgtggtgtaagaaaaagggattccgggaagtgggtttgcgaagtaagagaacctaacaagaa |
45888371 |
T |
|
| Q |
710 |
aaccagaatttggcttggaacattccctacaccggagatggcggcgcgtgcgcatgatgt |
769 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45888372 |
aaccagaatttggcttggaacattccctacaccggagatggcggcgcgtgcgcatgatgt |
45888431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 597 - 647
Target Start/End: Complemental strand, 23634304 - 23634254
Alignment:
| Q |
597 |
aagaagcgtgcagggaggaagaagttcagagaaacacgccaccctgtgtac |
647 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||| |||||| |
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| T |
23634304 |
aagaagcgtgcagggaggaagaagttcaaggagacacgccacccggtgtac |
23634254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 665
Target Start/End: Complemental strand, 23583389 - 23583318
Alignment:
| Q |
594 |
ccaaagaagcgtgcagggaggaagaagttcagagaaacacgccaccctgtgtaccgtggtgtaagaaagagg |
665 |
Q |
| |
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||||||||||||||||||||||||||||||| || || |||||||| || || | |||||||| |||||| |
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| T |
23583389 |
ccaaagaagcgtgcagggaggaagaagttcaaggagactcgccacccggtctataggggtgtaaggaagagg |
23583318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 640
Target Start/End: Complemental strand, 23587270 - 23587227
Alignment:
| Q |
597 |
aagaagcgtgcagggaggaagaagttcagagaaacacgccaccc |
640 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
23587270 |
aagaagcgtgcagggaggaagaagttcaaggaaactcgccaccc |
23587227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 624
Target Start/End: Complemental strand, 23391586 - 23391556
Alignment:
| Q |
594 |
ccaaagaagcgtgcagggaggaagaagttca |
624 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23391586 |
ccaaagaagcgtgcagggaggaagaagttca |
23391556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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