View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9694_2 (Length: 497)

Name: NF9694_2
Description: NF9694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9694_2
NF9694_2
[»] chr8 (19 HSPs)
chr8 (326-497)||(27027518-27027689)
chr8 (326-431)||(25978717-25978822)
chr8 (327-431)||(8235375-8235479)
chr8 (324-361)||(33837972-33838009)
chr8 (325-361)||(9739983-9740019)
chr8 (325-361)||(27024431-27024467)
chr8 (327-361)||(2509039-2509073)
chr8 (327-361)||(45334519-45334553)
chr8 (327-360)||(25106455-25106488)
chr8 (327-360)||(28379191-28379224)
chr8 (327-360)||(33837729-33837762)
chr8 (327-360)||(45334276-45334309)
chr8 (327-359)||(9740231-9740263)
chr8 (324-360)||(25979003-25979039)
chr8 (324-359)||(13469505-13469540)
chr8 (326-361)||(25106210-25106245)
chr8 (324-362)||(27793433-27793471)
chr8 (332-361)||(13469748-13469777)
chr8 (327-360)||(38495472-38495505)
[»] chr2 (11 HSPs)
chr2 (326-497)||(10112338-10112509)
chr2 (326-497)||(36963499-36963668)
chr2 (327-360)||(15233999-15234032)
chr2 (327-360)||(43040849-43040882)
chr2 (326-359)||(43041094-43041127)
chr2 (327-359)||(44104546-44104578)
chr2 (326-361)||(35793149-35793184)
chr2 (326-361)||(41252414-41252449)
chr2 (327-361)||(10118695-10118729)
chr2 (327-361)||(44104799-44104833)
chr2 (329-361)||(15233757-15233789)
[»] chr5 (15 HSPs)
chr5 (326-497)||(42793423-42793596)
chr5 (321-497)||(41610367-41610544)
chr5 (327-384)||(8724926-8724983)
chr5 (327-361)||(12399189-12399223)
chr5 (327-361)||(23090298-23090332)
chr5 (326-360)||(29875198-29875232)
chr5 (327-361)||(34208538-34208572)
chr5 (327-360)||(12398946-12398979)
chr5 (326-359)||(23090543-23090576)
chr5 (327-360)||(42757805-42757838)
chr5 (325-361)||(3077595-3077631)
chr5 (327-361)||(4145694-4145728)
chr5 (327-361)||(29874954-29874988)
chr5 (326-360)||(34208782-34208816)
chr5 (327-361)||(42793040-42793074)
[»] chr4 (13 HSPs)
chr4 (327-497)||(19256970-19257137)
chr4 (341-408)||(51830715-51830782)
chr4 (324-361)||(19256183-19256220)
chr4 (322-361)||(30469411-30469450)
chr4 (326-361)||(36016278-36016313)
chr4 (326-361)||(8956019-8956054)
chr4 (326-361)||(45590741-45590776)
chr4 (330-360)||(8955779-8955809)
chr4 (326-360)||(49162332-49162366)
chr4 (324-361)||(39481900-39481937)
chr4 (327-360)||(45590986-45591019)
chr4 (325-361)||(33288648-33288684)
chr4 (328-360)||(39482106-39482138)
[»] chr1 (18 HSPs)
chr1 (326-497)||(33023291-33023462)
chr1 (324-431)||(37875724-37875830)
chr1 (324-361)||(4055481-4055518)
chr1 (324-361)||(47669116-47669153)
chr1 (326-361)||(4817268-4817303)
chr1 (327-361)||(9831503-9831537)
chr1 (326-360)||(10737700-10737734)
chr1 (327-361)||(18126851-18126885)
chr1 (327-361)||(33020206-33020240)
chr1 (326-360)||(46220503-46220537)
chr1 (327-360)||(47669363-47669396)
chr1 (325-358)||(48565063-48565096)
chr1 (328-360)||(1236071-1236103)
chr1 (327-361)||(1236273-1236307)
chr1 (330-360)||(9831747-9831777)
chr1 (327-361)||(46220259-46220293)
chr1 (324-361)||(1749566-1749603)
chr1 (327-360)||(8889687-8889720)
[»] chr7 (20 HSPs)
chr7 (327-434)||(29723307-29723414)
chr7 (342-434)||(43706348-43706440)
chr7 (341-424)||(33379003-33379086)
chr7 (325-360)||(4405353-4405388)
chr7 (326-361)||(29427407-29427442)
chr7 (325-360)||(29890824-29890859)
chr7 (326-361)||(43701550-43701585)
chr7 (327-361)||(6387935-6387969)
chr7 (327-361)||(17904163-17904197)
chr7 (327-361)||(26770179-26770213)
chr7 (327-361)||(37179574-37179608)
chr7 (327-361)||(46467578-46467612)
chr7 (327-360)||(17904407-17904440)
chr7 (327-360)||(37179331-37179364)
chr7 (326-359)||(46467334-46467367)
chr7 (327-359)||(29891071-29891103)
chr7 (327-361)||(33379210-33379244)
chr7 (326-359)||(4405108-4405141)
chr7 (327-360)||(6387692-6387725)
chr7 (326-359)||(26770424-26770457)
[»] chr3 (30 HSPs)
chr3 (342-434)||(49319623-49319715)
chr3 (325-361)||(1352239-1352275)
chr3 (324-360)||(29014687-29014723)
chr3 (321-361)||(39528743-39528783)
chr3 (326-361)||(29371781-29371816)
chr3 (320-359)||(46878980-46879019)
chr3 (327-361)||(18996967-18997001)
chr3 (327-361)||(18999506-18999540)
chr3 (327-361)||(32677720-32677754)
chr3 (326-360)||(36737833-36737867)
chr3 (326-360)||(38855561-38855595)
chr3 (326-360)||(39518651-39518685)
chr3 (326-360)||(41349370-41349404)
chr3 (327-361)||(41349614-41349648)
chr3 (327-360)||(1351996-1352029)
chr3 (327-360)||(18997211-18997244)
chr3 (327-360)||(18999750-18999783)
chr3 (327-360)||(39528993-39529026)
chr3 (326-361)||(55365907-55365942)
chr3 (327-361)||(28228436-28228470)
chr3 (327-361)||(39807222-39807256)
chr3 (339-373)||(46878945-46878979)
chr3 (327-361)||(49319347-49319381)
chr3 (324-361)||(22157255-22157292)
chr3 (327-360)||(29371538-29371571)
chr3 (327-360)||(32677477-32677510)
chr3 (327-360)||(39806979-39807012)
chr3 (325-361)||(21974147-21974183)
chr3 (325-361)||(21996578-21996614)
chr3 (325-361)||(36738077-36738113)
[»] chr6 (16 HSPs)
chr6 (326-431)||(34045060-34045165)
chr6 (325-361)||(27312359-27312395)
chr6 (326-361)||(32274433-32274468)
chr6 (326-360)||(27312113-27312147)
chr6 (327-361)||(29302514-29302548)
chr6 (327-360)||(8504733-8504766)
chr6 (320-361)||(12174693-12174734)
chr6 (326-361)||(7156468-7156503)
chr6 (326-360)||(2543325-2543359)
chr6 (326-396)||(31170989-31171059)
chr6 (327-360)||(18741947-18741980)
chr6 (327-360)||(32274678-32274711)
chr6 (329-361)||(8504945-8504977)
chr6 (327-359)||(18742191-18742223)
chr6 (325-361)||(29452786-29452822)
chr6 (461-497)||(34045280-34045316)
[»] scaffold0103 (1 HSPs)
scaffold0103 (319-360)||(44862-44903)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 326 - 497
Target Start/End: Complemental strand, 27027689 - 27027518
Alignment:
Q  326 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaata 425  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27027689 atactccctccattccttttcttttgatgttttaggtgattgcacaaatattaaggaatcattaaattataggaataattgtatggtttatactaaaata 27027590  T
Q  426 cccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaa 497  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  27027589 cccttactttactccatgatttttttttctcaaaattctaatctccttaattattgaaactcaccacacaaa 27027518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 431
Target Start/End: Original strand, 25978717 - 25978822
Alignment:
Q  326 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaata 425  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| || |||| |||||||||||  ||||  ||||||||     
T  25978717 atactacctccatttcttttcttttgatgttttaggtgattgcacaagtattaaggaatcatttaagtatatgaataattgtaaggttttgactaaaatg 25978816  T
Q  426 ccctta 431  Q
    ||||||    
T  25978817 ccctta 25978822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 327 - 431
Target Start/End: Complemental strand, 8235479 - 8235375
Alignment:
Q  327 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaatac 426  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||| ||||| ||||| |||||| |||| ||| |    
T  8235479 tactctctccatttcttttcttttgatattttagatgattgcacatatattcaggaatcattaaaatataagaatagttgtaaagtttagactataatgc 8235380  T
Q  427 cctta 431  Q
    |||||    
T  8235379 cctta 8235375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 33838009 - 33837972
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33838009 taatactccctccattccttttcttttgatgttttaga 33837972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 9739983 - 9740019
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||||    
T  9739983 aatactccctccattccttttcttttgatgttttaga 9740019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 27024431 - 27024467
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||||    
T  27024431 aatactccctccattccttttcttttgatgttttaga 27024467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 2509073 - 2509039
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgttttaga 2509039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 45334553 - 45334519
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  45334553 tactccctccattccttttcttttgatgttttaga 45334519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 25106488 - 25106455
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  25106488 tactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 28379224 - 28379191
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 33837729 - 33837762
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 45334276 - 45334309
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 9740263 - 9740231
Alignment:
Q  327 tactccctccattccttttcttttgatgtttta 359  Q
    |||||||||||||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 25979039 - 25979003
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||| ||||||||||||||||||||    
T  25979039 taatactccctccatttcttttcttttgatgttttag 25979003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 13469505 - 13469540
Alignment:
Q  324 taatactccctccattccttttcttttgatgtttta 359  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13469505 taatactccttccattccttttcttttgatgtttta 13469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 25106210 - 25106245
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    |||||| |||||||||||||||||||||||||||||    
T  25106210 atactctctccattccttttcttttgatgttttaga 25106245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 27793471 - 27793433
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttagat 362  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  27793471 taatactccttccattcattttcttttgatgttttagat 27793433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 361
Target Start/End: Complemental strand, 13469777 - 13469748
Alignment:
Q  332 cctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||    
T  13469777 cctccattccttttcttttgatgttttaga 13469748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 38495472 - 38495505
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||| |||||||||||||||||||    
T  38495472 tactccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 326 - 497
Target Start/End: Original strand, 10112338 - 10112509
Alignment:
Q  326 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaata 425  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10112338 atactccctccattccttttcttttgatgttttaggtgattgcacaaatattaaggaatcattaaattataggaataattgtatggtttatactaaaata 10112437  T
Q  426 cccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaa 497  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  10112438 cccttactttactccatgatttttttttctcaaaattctaatctccttaattattgaaactcaccacacaaa 10112509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 326 - 497
Target Start/End: Complemental strand, 36963668 - 36963499
Alignment:
Q  326 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaata 425  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||||||||||    
T  36963668 atactctctctattccttttcttttgatgttttaggtgattgcacaaatattaagaaattattaaattatagaaataattgtatggtttatactaaaata 36963569  T
Q  426 cccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaa 497  Q
    | ||||| ||||||| |||         ||||||||||||||||||||||||||||| ||||||||||||||    
T  36963568 ctcttac-ttactccttga-ttttttttctcaaaattctaatctccttaattattgacactcaccacacaaa 36963499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 15234032 - 15233999
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 43040849 - 43040882
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 359
Target Start/End: Complemental strand, 43041127 - 43041094
Alignment:
Q  326 atactccctccattccttttcttttgatgtttta 359  Q
    ||||||||||||||||||||||||||||||||||    
T  43041127 atactccctccattccttttcttttgatgtttta 43041094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 44104546 - 44104578
Alignment:
Q  327 tactccctccattccttttcttttgatgtttta 359  Q
    |||||||||||||||||||||||||||||||||    
T  44104546 tactccctccattccttttcttttgatgtttta 44104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 35793184 - 35793149
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35793184 atactccctccattctttttcttttgatgttttaga 35793149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 41252414 - 41252449
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41252414 atactccctccattccttttctttttatgttttaga 41252449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 10118729 - 10118695
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||| |||||||    
T  10118729 tactccctccattccttttcttttgatattttaga 10118695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 44104833 - 44104799
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||| ||||||||||||||||||||||||    
T  44104833 tactccctccgttccttttcttttgatgttttaga 44104799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 15233757 - 15233789
Alignment:
Q  329 ctccctccattccttttcttttgatgttttaga 361  Q
    ||||||| |||||||||||||||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttaga 15233789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 326 - 497
Target Start/End: Complemental strand, 42793596 - 42793423
Alignment:
Q  326 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaata 425  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42793596 atactccctccattccttttcttttgatgttttaggtgattgcacaaatattaaggaatcattaaattataggaataattgtatggtttatactaaaata 42793497  T
Q  426 cccttactttactccatga--nnnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaa 497  Q
    |||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||    
T  42793496 cccttactttactccatgattttttttcttctcaaaattctaatctccttaattattgaaactcaccacacaaa 42793423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 321 - 497
Target Start/End: Original strand, 41610367 - 41610544
Alignment:
Q  321 atctaatactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatacta 420  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  41610367 atctaatactccctccattccttttcttttgatgttttaagtgattggacaaatattaaagaatcattaaattatatgaataattgtatggtttatacta 41610466  T
Q  421 aaatacccttactttactcc--atgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaa 497  Q
    |||||||||||| |||||||  ||           ||||||||||||||||| ||||||||||||||||||||||||||    
T  41610467 aaatacccttac-ttactccttatttttttttcttctcaaaattctaatctctttaattattgaaactcaccacacaaa 41610544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 8724983 - 8724926
Alignment:
Q  327 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaat 384  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  8724983 tactcactccatttcttttcttttgatgttttagctgattgcacaagtattaaggaat 8724926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 12399223 - 12399189
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgttttaga 12399189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 23090298 - 23090332
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgttttaga 23090332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 29875232 - 29875198
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||||    
T  29875232 atactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 34208538 - 34208572
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgttttaga 34208572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 12398946 - 12398979
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 359
Target Start/End: Complemental strand, 23090576 - 23090543
Alignment:
Q  326 atactccctccattccttttcttttgatgtttta 359  Q
    ||||||||||||||||||||||||||||||||||    
T  23090576 atactccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 42757805 - 42757838
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 3077595 - 3077631
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||| ||||||||||||||||||||    
T  3077595 aatactccctccattcattttcttttgatgttttaga 3077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 4145694 - 4145728
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    ||||| |||||||||||||||||||||||||||||    
T  4145694 tactcgctccattccttttcttttgatgttttaga 4145728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 29874954 - 29874988
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||| ||||||||||||||||||||    
T  29874954 tactccctccattctttttcttttgatgttttaga 29874988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 34208816 - 34208782
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||| ||||||||||||||    
T  34208816 atactccctccattcctttttttttgatgttttag 34208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 42793040 - 42793074
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    ||||| |||||||||||||||||||||||||||||    
T  42793040 tactcactccattccttttcttttgatgttttaga 42793074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 327 - 497
Target Start/End: Complemental strand, 19257137 - 19256970
Alignment:
Q  327 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaatac 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaattattaaattataggaataattgtatggtttatactaaaatac 19257038  T
Q  427 ccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaa 497  Q
    ||||||   |||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  19257037 ccttac---actccatgattttttttcctcaaaattctaatctccttaattattgaaactcaccacacaaa 19256970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 51830715 - 51830782
Alignment:
Q  341 cttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgta 408  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |||||    
T  51830715 cttttcttttgatgttttagttgattgcacaagtattaaggaatcattaaaatataggaatagttgta 51830782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 19256183 - 19256220
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19256183 taatactccctccattccttttcttttgatgttttaga 19256220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 30469450 - 30469411
Alignment:
Q  322 tctaatactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  30469450 tctaatactcccttcattccttttcttttgatgttttaga 30469411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 36016278 - 36016313
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||    
T  36016278 atactccctccattccttttcttttgatgttttaga 36016313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 8956054 - 8956019
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||| |||||||||||||||    
T  8956054 atactccctccattcctttttttttgatgttttaga 8956019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 45590741 - 45590776
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||| ||||||||||||||||||||    
T  45590741 atactccctccattcattttcttttgatgttttaga 45590776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 360
Target Start/End: Original strand, 8955779 - 8955809
Alignment:
Q  330 tccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttag 8955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 49162366 - 49162332
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||| ||||||||||||||||||    
T  49162366 atactccctccattccctttcttttgatgttttag 49162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 39481900 - 39481937
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttaga 361  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  39481900 taatattccctccatttcttttcttttgatgttttaga 39481937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 45591019 - 45590986
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||| |||||||||||||||||||    
T  45591019 tactccctccattcattttcttttgatgttttag 45590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 33288684 - 33288648
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  33288684 aatactccctccatttcttttcttttgatattttaga 33288648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 39482138 - 39482106
Alignment:
Q  328 actccctccattccttttcttttgatgttttag 360  Q
    |||||||||||| ||||||||||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttag 39482106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 9e-62; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 326 - 497
Target Start/End: Complemental strand, 33023462 - 33023291
Alignment:
Q  326 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaata 425  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33023462 atactccctccattccttttcttttgacgttttaggtgattgcataaatattaaggaatcattaaattataggaataattgtatggtttatactaaaata 33023363  T
Q  426 cccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaa 497  Q
    |||||| ||||||||||||         |||||||||||||| |||||||||||||||||||||||||||||    
T  33023362 cccttattttactccatgatttttttttctcaaaattctaatttccttaattattgaaactcaccacacaaa 33023291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 431
Target Start/End: Original strand, 37875724 - 37875830
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaa 423  Q
    |||||||||||||||| |||||||||||||||||||| |  | |||||| | ||||||||| |||||  ||||| |||| |||||| ||||  |||||||    
T  37875724 taatactccctccatttcttttcttttgatgttttagctcttggcacaagtcttaaggaataattaatgtatagaaatatttgtat-gttttgactaaaa 37875822  T
Q  424 taccctta 431  Q
    || |||||    
T  37875823 tatcctta 37875830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 4055481 - 4055518
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4055481 taatactccctccattccttttcttttgatgttttaga 4055518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 47669116 - 47669153
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47669116 taatactccctccattccttttcttttgatgttttaga 47669153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 4817268 - 4817303
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||    
T  4817268 atactccctccattccttttcttttgatgttttaga 4817303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 9831503 - 9831537
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgttttaga 9831537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 10737700 - 10737734
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||||    
T  10737700 atactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 18126851 - 18126885
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgttttaga 18126885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 33020206 - 33020240
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgttttaga 33020240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 46220537 - 46220503
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||||    
T  46220537 atactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 47669396 - 47669363
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 48565096 - 48565063
Alignment:
Q  325 aatactccctccattccttttcttttgatgtttt 358  Q
    ||||||||||||||||||||||||||||||||||    
T  48565096 aatactccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 360
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  328 actccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 1236307 - 1236273
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||| ||||||||||||||||||||    
T  1236307 tactccctccattcattttcttttgatgttttaga 1236273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 360
Target Start/End: Complemental strand, 9831777 - 9831747
Alignment:
Q  330 tccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttag 9831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 46220259 - 46220293
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||| |||||||||||||||||||||||||    
T  46220259 tactccctctattccttttcttttgatgttttaga 46220293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 1749603 - 1749566
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttaga 361  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  1749603 taatacttcctctattccttttcttttgatgttttaga 1749566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 8889720 - 8889687
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||| ||||||||||||||    
T  8889720 tactccctccattccttttattttgatgttttag 8889687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 327 - 434
Target Start/End: Complemental strand, 29723414 - 29723307
Alignment:
Q  327 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaatac 426  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgttttaggtgattgcacaaatattaaggaatcattaaattataagaataattgtatggtttatactaaaatac 29723315  T
Q  427 ccttactt 434  Q
    ||||||||    
T  29723314 ccttactt 29723307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 43706440 - 43706348
Alignment:
Q  342 ttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaatacccttactt 434  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  43706440 ttttttttttatgttttagatgattgcacaaatattaaggaatcattaaattataagaataattatatggtttatactaaaatacccttactt 43706348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 33379003 - 33379086
Alignment:
Q  341 cttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaat 424  Q
    |||||||||||||||||||  ||||||||||| ||||||| |||||||||| |||||||||| ||| |  ||||| ||||||||    
T  33379003 cttttcttttgatgttttaagtgattgcacaagtattaagaaatcattaaagtataggaatagttggaaggtttagactaaaat 33379086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 360
Target Start/End: Complemental strand, 4405388 - 4405353
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||||    
T  4405388 aatactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 29427442 - 29427407
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||    
T  29427442 atactccctccattccttttcttttgatgttttaga 29427407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 29890824 - 29890859
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||||    
T  29890824 aatactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 43701550 - 43701585
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||    
T  43701550 atactccctccattccttttcttttgatgttttaga 43701585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 6387969 - 6387935
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  6387969 tactccctccattccttttcttttgatgttttaga 6387935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 17904163 - 17904197
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgttttaga 17904197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 26770179 - 26770213
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgttttaga 26770213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 37179608 - 37179574
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  37179608 tactccctccattccttttcttttgatgttttaga 37179574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 46467612 - 46467578
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgttttaga 46467578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 17904440 - 17904407
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 37179331 - 37179364
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 46467334 - 46467367
Alignment:
Q  326 atactccctccattccttttcttttgatgtttta 359  Q
    ||||||||||||||||||||||||||||||||||    
T  46467334 atactccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 29891103 - 29891071
Alignment:
Q  327 tactccctccattccttttcttttgatgtttta 359  Q
    |||||||||||||||||||||||||||||||||    
T  29891103 tactccctccattccttttcttttgatgtttta 29891071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 33379244 - 33379210
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||| |||||||||||||||||||||    
T  33379244 tactccctccatttcttttcttttgatgttttaga 33379210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 4405108 - 4405141
Alignment:
Q  326 atactccctccattccttttcttttgatgtttta 359  Q
    |||||||||||||| |||||||||||||||||||    
T  4405108 atactccctccatttcttttcttttgatgtttta 4405141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 6387692 - 6387725
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    |||| |||||||||||||||||||||||||||||    
T  6387692 tacttcctccattccttttcttttgatgttttag 6387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 359
Target Start/End: Complemental strand, 26770457 - 26770424
Alignment:
Q  326 atactccctccattccttttcttttgatgtttta 359  Q
    ||||||||||||||| ||||||||||||||||||    
T  26770457 atactccctccattcattttcttttgatgtttta 26770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 49319715 - 49319623
Alignment:
Q  342 ttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaatacccttactt 434  Q
    |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  49319715 tttttttttgatgttttaggtgattgcacacatattaaggaatcattaaattatagaaataattgtatggtttatactaaaatacccttactt 49319623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 1352275 - 1352239
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||||    
T  1352275 aatactccctccattccttttcttttgatgttttaga 1352239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 29014687 - 29014723
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||||||    
T  29014687 taatactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 39528743 - 39528783
Alignment:
Q  321 atctaatactccctccattccttttcttttgatgttttaga 361  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  39528743 atctactactccctccattccttttcttttgatgttttaga 39528783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 29371816 - 29371781
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||    
T  29371816 atactccctccattccttttcttttgatgttttaga 29371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 46879019 - 46878980
Alignment:
Q  320 tatctaatactccctccattccttttcttttgatgtttta 359  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  46879019 tatctattactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 18996967 - 18997001
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgttttaga 18997001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 18999506 - 18999540
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgttttaga 18999540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 32677754 - 32677720
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgttttaga 32677720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 36737833 - 36737867
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||||    
T  36737833 atactccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 38855595 - 38855561
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||||    
T  38855595 atactccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 39518685 - 39518651
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||||    
T  39518685 atactccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 41349370 - 41349404
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||||    
T  41349370 atactccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 41349648 - 41349614
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgttttaga 41349614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 1351996 - 1352029
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 18997244 - 18997211
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 18999783 - 18999750
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 39529026 - 39528993
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 55365907 - 55365942
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||| ||||||||||||||||||||||||||    
T  55365907 atactcccttcattccttttcttttgatgttttaga 55365942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 28228436 - 28228470
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    ||||| |||||||||||||||||||||||||||||    
T  28228436 tactctctccattccttttcttttgatgttttaga 28228470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 39807256 - 39807222
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||| ||||||||||||||||||||||||||||||    
T  39807256 tacttcctccattccttttcttttgatgttttaga 39807222  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 373
Target Start/End: Complemental strand, 46878979 - 46878945
Alignment:
Q  339 tccttttcttttgatgttttagatgattgcacaaa 373  Q
    |||||||||||||||||||||| ||||||||||||    
T  46878979 tccttttcttttgatgttttaggtgattgcacaaa 46878945  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 49319347 - 49319381
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||| ||||||||||||||||||||||||||||||    
T  49319347 tacttcctccattccttttcttttgatgttttaga 49319381  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 22157255 - 22157292
Alignment:
Q  324 taatactccctccattccttttcttttgatgttttaga 361  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  22157255 taatattccctccatttcttttcttttgatgttttaga 22157292  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 29371538 - 29371571
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||| |||||||||||||||||||    
T  29371538 tactccctccattcattttcttttgatgttttag 29371571  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 32677477 - 32677510
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||| |||||||||||||||||||    
T  32677477 tactccctccattcattttcttttgatgttttag 32677510  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 39806979 - 39807012
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    |||||||| |||||||||||||||||||||||||    
T  39806979 tactcccttcattccttttcttttgatgttttag 39807012  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 21974147 - 21974183
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    |||| |||||||||| |||||||||||||||||||||    
T  21974147 aatattccctccatttcttttcttttgatgttttaga 21974183  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 21996578 - 21996614
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    |||| |||||||||| |||||||||||||||||||||    
T  21996578 aatattccctccatttcttttcttttgatgttttaga 21996614  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 36738113 - 36738077
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    |||||||| | ||||||||||||||||||||||||||    
T  36738113 aatactccattcattccttttcttttgatgttttaga 36738077  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 431
Target Start/End: Original strand, 34045060 - 34045165
Alignment:
Q  326 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataattgtatagtttatactaaaata 425  Q
    |||||| ||| ||| ||||| || ||||||||||| ||||||||||| ||||||| |||||||||| ||||  |||| |||||  ||||| |||||| |     
T  34045060 atactcactctatttcttttattgtgatgttttagctgattgcacaagtattaagaaatcattaaagtatacaaatagttgtaaggtttagactaaactg 34045159  T
Q  426 ccctta 431  Q
    ||||||    
T  34045160 ccctta 34045165  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 27312395 - 27312359
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||||    
T  27312395 aatactccctccattccttttcttttgatgttttaga 27312359  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 32274433 - 32274468
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||||||||||||||||||||||||    
T  32274433 atactccctccattccttttcttttgatgttttaga 32274468  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 360
Target Start/End: Original strand, 27312113 - 27312147
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||||||||||||||||||||||||    
T  27312113 atactccctccattccttttcttttgatgttttag 27312147  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 29302548 - 29302514
Alignment:
Q  327 tactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgttttaga 29302514  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 8504733 - 8504766
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttag 8504766  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 12174693 - 12174734
Alignment:
Q  320 tatctaatactccctccattccttttcttttgatgttttaga 361  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  12174693 tatcttatactccctccattccttttcttttaatgttttaga 12174734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 7156503 - 7156468
Alignment:
Q  326 atactccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||||| |||||||||||||||||||||    
T  7156503 atactccctccatttcttttcttttgatgttttaga 7156468  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 2543359 - 2543325
Alignment:
Q  326 atactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||||| |||||||||||||||||||    
T  2543359 atactccctccattcgttttcttttgatgttttag 2543325  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 31170989 - 31171059
Alignment:
Q  326 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattata 396  Q
    |||||||||||||| ||||||||||||| |||||| |  | |||||||| ||||||| | |||||| ||||    
T  31170989 atactccctccatttcttttcttttgatattttagttcttagcacaaattttaaggagtaattaaagtata 31171059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 18741947 - 18741980
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    ||||||||||||| ||||||||||||||||||||    
T  18741947 tactccctccatttcttttcttttgatgttttag 18741980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Complemental strand, 32274711 - 32274678
Alignment:
Q  327 tactccctccattccttttcttttgatgttttag 360  Q
    |||||||||||||| |||||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 361
Target Start/End: Complemental strand, 8504977 - 8504945
Alignment:
Q  329 ctccctccattccttttcttttgatgttttaga 361  Q
    |||||||||||| ||||||||||||||||||||    
T  8504977 ctccctccattcattttcttttgatgttttaga 8504945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 18742223 - 18742191
Alignment:
Q  327 tactccctccattccttttcttttgatgtttta 359  Q
    ||||||||||||| |||||||||||||||||||    
T  18742223 tactccctccatttcttttcttttgatgtttta 18742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 29452822 - 29452786
Alignment:
Q  325 aatactccctccattccttttcttttgatgttttaga 361  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  29452822 aatactccctccatttcttttcttctgatgttttaga 29452786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 497
Target Start/End: Original strand, 34045280 - 34045316
Alignment:
Q  461 ttctaatctccttaattattgaaactcaccacacaaa 497  Q
    ||||||||||||||||||| || ||||||||||||||    
T  34045280 ttctaatctccttaattatcgacactcaccacacaaa 34045316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 44903 - 44862
Alignment:
Q  319 ttatctaatactccctccattccttttcttttgatgttttag 360  Q
    |||| |||||||| || |||||||||||||||||||||||||    
T  44903 ttatttaatactctctacattccttttcttttgatgttttag 44862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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