View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9694_3 (Length: 471)
Name: NF9694_3
Description: NF9694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9694_3 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 138 - 427
Target Start/End: Original strand, 33756982 - 33757270
Alignment:
| Q |
138 |
gccgtgaaagttagttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacagcca |
237 |
Q |
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| T |
33756982 |
gccgtgaaagtttgttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacaacca |
33757081 |
T |
|
| Q |
238 |
ccactcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttatttccaatacaccaattcgaaccactt |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33757082 |
ccactcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttatttccaatacaccaattcgaaccactt |
33757181 |
T |
|
| Q |
338 |
ttaatgctttcactctcttcatgattaataaacattcttctcactcgacaatcaccgtcaccgtcacagtcatttccgttaccgtcacag |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
33757182 |
ttaatgctttcactctcttcatgattaataaacattcttctcaatc-acaatcaccgtcacagtcacagtcatttccattaccgtcacag |
33757270 |
T |
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