View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9694_7 (Length: 342)
Name: NF9694_7
Description: NF9694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9694_7 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 49767101 - 49766980
Alignment:
| Q |
25 |
aagagttaacattggtgttgaagatgattccattgatggcatgcaatgcattgatcatccatacagaaacaaccctggtgggatctgtgctttttgtctt |
124 |
Q |
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| T |
49767101 |
aagagttaacattggtgttgaagatgattccattgatggcatgcaatgcattgatcatccatatagaaacaaccctggtgggatctgtgctttttgtctt |
49767002 |
T |
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| Q |
125 |
caagaaaaacttggtaaactcg |
146 |
Q |
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| T |
49767001 |
caagaaaaacttggtaaactcg |
49766980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 49766881 - 49766791
Alignment:
| Q |
245 |
actactcgtcattgtccttcttcttcttc---catcaacactgtatcagctacaactgctgtaacttcatcttctcctctctcactctctg |
332 |
Q |
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| T |
49766881 |
actactcgtcattgtccttcttcttcttcttccatcaacactgtatcagcaacaactgctgtaacttcatcttcttctctctcactctctg |
49766791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 14137707 - 14137753
Alignment:
| Q |
98 |
cctggtgggatctgtgctttttgtcttcaagaaaaacttggtaaact |
144 |
Q |
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| T |
14137707 |
cctggtggtatatgtgctttttgtcttcaagaaaaacttggtaaact |
14137753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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