View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9694_9 (Length: 317)
Name: NF9694_9
Description: NF9694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9694_9 |
 | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 49 - 306
Target Start/End: Complemental strand, 1182334 - 1182077
Alignment:
| Q |
49 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttc |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182334 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgatcatttcttactgctatctaatgcaacaaccaatctcccattttc |
1182235 |
T |
|
| Q |
149 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatctctgtaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182234 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
1182135 |
T |
|
| Q |
249 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182134 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
1182077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 18194341 - 18194053
Alignment:
| Q |
13 |
ttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttctt |
112 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||| || | ||||| | | ||||||| | ||| |||||| ||||||||||| | | |||||| || || |
|
|
| T |
18194341 |
ttacttcaaatcctggtggttgtgtaatatacactttctcttcaagtggtccattcagaaatgcagactttacatctaaatgtgatagtgaccagttttt |
18194242 |
T |
|
| Q |
113 |
actgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccatatctctgtaggaagcctcta |
212 |
Q |
| |
|
|||||| | | ||| || |||||||| | |||||| ||| || ||| | ||||| || |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
18194241 |
actgcttgcaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagtcaacaccatatctctgtaggaaacctcta |
18194142 |
T |
|
| Q |
213 |
gccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttctt |
301 |
Q |
| |
|
||||||| || ||||||| ||| || | || ||||| ||||||| ||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
18194141 |
gccactaatctggctttgtatttagagattgaaccatcaggattcaatttcaccttgaaaatccatttaacatcaatggttttcttctt |
18194053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 8169536 - 8169821
Alignment:
| Q |
17 |
ttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactg |
116 |
Q |
| |
|
|||||||| | |||||| ||||||||||| | ||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8169536 |
ttcaaatcttagaggttcagtaacatatatagtttcttccaatagtccatttaggaatgcagactttacatctaaatgaaacaatgaccatttcttactg |
8169635 |
T |
|
| Q |
117 |
ctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccatatctctgtaggaagcctctagcca |
216 |
Q |
| |
|
|| |||||||| |||||||||| |||||| |||| ||| ||||||| ||||||||||| |||| ||||| ||||||||||||||||| | |
|
|
| T |
8169636 |
ctggttaatgcaataaccaatctcaatatttctatccttgatactggtgcaaagacttcattatagtcaatttcatattaatgtaggaagcctctagcta |
8169735 |
T |
|
| Q |
217 |
ctagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttc |
302 |
Q |
| |
|
|||| ||||||||||| ||||||| |||| ||| |||||||| ||| || |||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
8169736 |
ctagtcttgctttgtgctttgaaaatgtgtcatttggattcaatttgactttgaaaatccatttcacattaatgtttttcttcttc |
8169821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 32369186 - 32369486
Alignment:
| Q |
1 |
gctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaa |
100 |
Q |
| |
|
||||||| |||||||||||||| | || ||||| |||||||| | | |||||||||| ||||||| | ||| |||||| ||||||| |||| | || |
|
|
| T |
32369186 |
gctccttcccttttacttcaaattcaggtggttgtgtaacatacatatcttcttctaatggtccattcagaaatgcagacttaacatctatatgagataa |
32369285 |
T |
|
| Q |
101 |
tgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccatatctctgt |
200 |
Q |
| |
|
|||||| ||||| || | | | ||| || |||||||| | |||||||| | || ||| | ||||| || |||||||| |||||||||||||||| | |
|
|
| T |
32369286 |
tgaccaattcttgctacaggccagtgccaccaccaatcttatagtttctaatttagctactggagcaaatacctcattatagtcaacaccatatctctat |
32369385 |
T |
|
| Q |
201 |
aggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttct |
300 |
Q |
| |
|
| ||| ||||| || || | || ||||||| ||| |||| || |||| ||||||| ||| || |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
32369386 |
aagaaacctctggcaaccaatctggctttgtatttggaaaatgattcatcaggattcaatttcactttgaaaatccatttaacatcaatggttttcttct |
32369485 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
32369486 |
t |
32369486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 301
Target Start/End: Original strand, 4959228 - 4959452
Alignment:
| Q |
77 |
agacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttca |
176 |
Q |
| |
|
|||||| ||||||||||| | |||||||| || |||||||| | | ||| || |||||||| | |||||| ||| || ||| | ||||| || ||| |
|
|
| T |
4959228 |
agactttacatctaaatgtgataatgaccagtttttactgcttacaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctca |
4959327 |
T |
|
| Q |
177 |
ttataatcaacaccatatctctgtaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattc |
276 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||| |||| || ||||||| ||| || | || ||||| |||||| ||| ||||||||||| | |
|
|
| T |
4959328 |
ttatagtctacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcaccttgaaaatcc |
4959427 |
T |
|
| Q |
277 |
atttcacatcaatggttttcttctt |
301 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
4959428 |
atttaacatcaatggttttcttctt |
4959452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 17153 - 17071
Alignment:
| Q |
203 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
285 |
Q |
| |
|
||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
|
|
| T |
17153 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
17071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 8190578 - 8190496
Alignment:
| Q |
203 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
285 |
Q |
| |
|
||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
|
|
| T |
8190578 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
8190496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University