View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9694_low_1 (Length: 336)
Name: NF9694_low_1
Description: NF9694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9694_low_1 |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 69 - 326
Target Start/End: Complemental strand, 1182334 - 1182077
Alignment:
| Q |
69 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttc |
168 |
Q |
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| T |
1182334 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgatcatttcttactgctatctaatgcaacaaccaatctcccattttc |
1182235 |
T |
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| Q |
169 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
268 |
Q |
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| T |
1182234 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
1182135 |
T |
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| Q |
269 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
326 |
Q |
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| T |
1182134 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
1182077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 321
Target Start/End: Complemental strand, 18194341 - 18194053
Alignment:
| Q |
33 |
ttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttctt |
132 |
Q |
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|||||||||||||||| ||||| |||| ||| || | ||||| | | ||||||| | ||| |||||| ||||||||||| | | |||||| || || |
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| T |
18194341 |
ttacttcaaatcctggtggttgtgtaatatacactttctcttcaagtggtccattcagaaatgcagactttacatctaaatgtgatagtgaccagttttt |
18194242 |
T |
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| Q |
133 |
actgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctcta |
232 |
Q |
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| T |
18194241 |
actgcttgcaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagtcaacaccatatctctgtaggaaacctcta |
18194142 |
T |
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| Q |
233 |
gccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttctt |
321 |
Q |
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| T |
18194141 |
gccactaatctggctttgtatttagagattgaaccatcaggattcaatttcaccttgaaaatccatttaacatcaatggttttcttctt |
18194053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 37 - 322
Target Start/End: Original strand, 8169536 - 8169821
Alignment:
| Q |
37 |
ttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactg |
136 |
Q |
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|||||||| | |||||| ||||||||||| | ||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
8169536 |
ttcaaatcttagaggttcagtaacatatatagtttcttccaatagtccatttaggaatgcagactttacatctaaatgaaacaatgaccatttcttactg |
8169635 |
T |
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| Q |
137 |
ctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagcca |
236 |
Q |
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| T |
8169636 |
ctggttaatgcaataaccaatctcaatatttctatccttgatactggtgcaaagacttcattatagtcaatttcatattaatgtaggaagcctctagcta |
8169735 |
T |
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| Q |
237 |
ctagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttc |
322 |
Q |
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|||| ||||||||||| ||||||| |||| ||| |||||||| ||| || |||||||| |||||||||| |||| ||||||||||| |
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| T |
8169736 |
ctagtcttgctttgtgctttgaaaatgtgtcatttggattcaatttgactttgaaaatccatttcacattaatgtttttcttcttc |
8169821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 32369186 - 32369486
Alignment:
| Q |
21 |
gctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaa |
120 |
Q |
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||||||| |||||||||||||| | || ||||| |||||||| | | |||||||||| ||||||| | ||| |||||| ||||||| |||| | || |
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| T |
32369186 |
gctccttcccttttacttcaaattcaggtggttgtgtaacatacatatcttcttctaatggtccattcagaaatgcagacttaacatctatatgagataa |
32369285 |
T |
|
| Q |
121 |
tgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccatatctctgc |
220 |
Q |
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| T |
32369286 |
tgaccaattcttgctacaggccagtgccaccaccaatcttatagtttctaatttagctactggagcaaatacctcattatagtcaacaccatatctctat |
32369385 |
T |
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| Q |
221 |
aggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttct |
320 |
Q |
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| ||| ||||| || || | || ||||||| ||| |||| || |||| ||||||| ||| || |||||||| ||||| ||||||||||||||||||| |
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| T |
32369386 |
aagaaacctctggcaaccaatctggctttgtatttggaaaatgattcatcaggattcaatttcactttgaaaatccatttaacatcaatggttttcttct |
32369485 |
T |
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| Q |
321 |
t |
321 |
Q |
| |
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| |
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| T |
32369486 |
t |
32369486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 321
Target Start/End: Original strand, 4959228 - 4959452
Alignment:
| Q |
97 |
agacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttca |
196 |
Q |
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|||||| ||||||||||| | |||||||| || |||||||| | | ||| || |||||||| | |||||| ||| || ||| | ||||| || ||| |
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| T |
4959228 |
agactttacatctaaatgtgataatgaccagtttttactgcttacaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctca |
4959327 |
T |
|
| Q |
197 |
ttataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattc |
296 |
Q |
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||||| || |||||||||||||| ||||| |||||||| |||| || ||||||| ||| || | || ||||| |||||| ||| ||||||||||| | |
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| T |
4959328 |
ttatagtctacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcaccttgaaaatcc |
4959427 |
T |
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| Q |
297 |
atttcacatcaatggttttcttctt |
321 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
4959428 |
atttaacatcaatggttttcttctt |
4959452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 17153 - 17071
Alignment:
| Q |
223 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
305 |
Q |
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||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
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| T |
17153 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
17071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 8190578 - 8190496
Alignment:
| Q |
223 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
305 |
Q |
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||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
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| T |
8190578 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
8190496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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