View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9695_1 (Length: 1138)

Name: NF9695_1
Description: NF9695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9695_1
NF9695_1
[»] chr4 (15 HSPs)
chr4 (16-385)||(46245627-46245996)
chr4 (483-879)||(46246108-46246504)
chr4 (12-385)||(46021607-46021969)
chr4 (847-1110)||(46013870-46014137)
chr4 (596-879)||(46020429-46020712)
chr4 (926-1110)||(46246534-46246718)
chr4 (928-1110)||(46020221-46020403)
chr4 (454-633)||(46021346-46021538)
chr4 (598-727)||(46015349-46015478)
chr4 (97-162)||(46428730-46428793)
chr4 (657-714)||(46020801-46020858)
chr4 (41-161)||(46303465-46303583)
chr4 (514-547)||(46246080-46246113)
chr4 (656-725)||(46303835-46303904)
chr4 (866-899)||(46246503-46246536)
[»] chr1 (5 HSPs)
chr1 (596-637)||(3802617-3802658)
chr1 (656-720)||(3801753-3801817)
chr1 (667-725)||(3804121-3804179)
chr1 (600-637)||(50668118-50668155)
chr1 (596-637)||(50668580-50668621)
[»] chr8 (2 HSPs)
chr8 (656-706)||(4522965-4523015)
chr8 (664-718)||(4525344-4525398)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 46245627 - 46245996
Alignment:
Q  16 tcattgacagagtccaaatgttggtttggaaattgatattatggaattcaagtatgcacaaagaaactatttttctaaaacttatttcaaaagcaatgct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46245627 tcattgacagagtccaaatgttggtttggaaattgatattatggaattcaagtatgcacaaagaaactatttttctaaaacttatttcaaaagcaatgct 46245726  T
Q  116 aaaggcctcataaacatagttaagatttccagaagaacttgccttaagatgcatcttgtagcaatcacattcacacgtatgaggaataggtatccatctg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46245727 aaaggcctcataaacatagttaagatttccagaagaacttgccttaagatgcatcttgtagcaatcacattcacacgtatgaggaataggtatccatctg 46245826  T
Q  216 ttaaatgttttcaaaaaataagaaatgtaagggtgagataatttcatatggctgaaacttgnnnnnnnnnnnngatgaggcataataaccaaaaacaaaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  46245827 ttaaatgttttcaaaaaataagaaatgtaagggtgagataatttcatatggctgaaacttgaaaaaagaaaaagatgaggcataataaccaaaaacaaaa 46245926  T
Q  316 tagaagacatcatttcatttaattgctcctcccgtcccaaattataagtcatttcctattatacccttca 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46245927 tagaagacatcatttcatttaattgctcctcccgtcccaaattataagtcatttcctattatacccttca 46245996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 483 - 879
Target Start/End: Original strand, 46246108 - 46246504
Alignment:
Q  483 aaacaacttatcattggaatggatggagcaattaaatgagctgaatttctaaagtatggaaacaataccaagataagcataacctttccaaagtatggcc 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46246108 aaacaacttatcattggaatggatggagcaattaaatgagctgaatttctaaagtatggaaacaataccaagataagcataacctttccaaagtatggcc 46246207  T
Q  583 gcaataccaagatttatgtgcatattaacattcaatcaagaggttgcattttcatnnnnnnnnnnnnnnnnnngaattgtatcttcacatggttttaaac 682  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||| ||||||||||    
T  46246208 gcaataccaagatttatgtgcatattaacattcaatcaagaggttgcattttcataaaaaaggaaaaaaaaaagaattgtatcttcacaaggttttaaac 46246307  T
Q  683 ttaaaaggtaaatcataacagatggattaagtgcatgtcaaccaagatgaaaaaaggtaattgacttacccatttttgcttgttagatgcaactgctgct 782  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46246308 ttataaggtaaatcataacagatggattaagtgcatgttaaccaagatgaaaaaaggtaattgacttacccatttttgcttgttagatgcaactgctgct 46246407  T
Q  783 ggaaacgctcgtaattcaaacttcgaacagaggccgcaactgatgtgaaagaacaaaattggcaacacatctctaatcacactacaaacacaaacac 879  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46246408 ggaaacgctcgtaattcaaacttcaaacagaggccgcaactgatgtgaaagaacaaaattgacaacacatctctaatcacactacaaacacaaacac 46246504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 12 - 385
Target Start/End: Complemental strand, 46021969 - 46021607
Alignment:
Q  12 atcatcattgacagagtccaaatgttggtttggaaattgatattatggaattcaagtatgcacaaagaaactatttttctaaaacttatttcaaaagcaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46021969 atcatcattgacagagtccaaatgttggtttggaaattgatattatggaattcaagtatgcacaaagaaactatttttctaaaacttatttaaaaagcaa 46021870  T
Q  112 tgctaaaggcctcataaacatagttaagatttccagaagaacttgccttaagatgcatcttgtagcaatcacattcacacgtatgaggaataggtatcca 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||    
T  46021869 tgctaaaggcctcataaacatagttaagatttccagaagaacttgccttaagatgcatcttgtagcaat------cacacgtatgaggaataggtatcca 46021776  T
Q  212 tctgttaaatgttttcaaaaaataagaaatgtaagggtgagataatttcatatggctgaaacttgnnnnnnnnnnnngatgaggcataataaccaaaaac 311  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||            |||||||||||||||||||||||    
T  46021775 tctgttaaatgttttcaaaaaataaaaaacgaaagggtgagataatttcatatggctgaaacttgaaaaaagaaaaagatgaggcataataaccaaaaac 46021676  T
Q  312 aaaatagaagacatcatttcatttaattgctcctcccgtcccaaattataagtcatttcctattatacccttca 385  Q
    |||||||||||||     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46021675 aaaatagaagaca-----tcatttaattgctcctcccgtcccaaattataagtcattttctattatacccttca 46021607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 847 - 1110
Target Start/End: Complemental strand, 46014137 - 46013870
Alignment:
Q  847 acacatctctaatcacacta----caaacacaaacactactccacttcactcctctatcatcaaccaaaccaaccactagcaactaacaatggcaatgga 942  Q
    ||||||||||||||||||||    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46014137 acacatctctaatcacactaaacacaaacataaacactactccacttcactcctctatcatcaaccaaaccaaccactagcaactaacaatggcaatgga 46014038  T
Q  943 gattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttctcaaaacctcaacttaga 1042  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46014037 gattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccactttctcaaaacctcaacttaga 46013938  T
Q  1043 cgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctccaaatgaagctag 1110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46013937 cgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctccaaatgaagctag 46013870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 596 - 879
Target Start/End: Complemental strand, 46020712 - 46020429
Alignment:
Q  596 ttatgtgcatattaacattcaatcaagaggttgcattttcatnnnnnnnnnnnnnnnnnngaattgtatcttcacatggttttaaacttaaaaggtaaat 695  Q
    ||||||||||||||||| ||||||||||||||||||||||||                  |||||||||||||||||||||||||||| | |||||||||    
T  46020712 ttatgtgcatattaacactcaatcaagaggttgcattttcataaaaaaggaaaacaaaaagaattgtatcttcacatggttttaaactcataaggtaaat 46020613  T
Q  696 cataacagatggattaagtgcatgtcaaccaagatgaaaaaaggtaattgacttacccatttttgcttgttagatgcaactgctgctggaaacgctcgta 795  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46020612 cataacagatggattaagtgcatgttaaccaagatgaaaaaaggtgattgacttacccatttttgcttgttagatgcaactgctgctggaaacgctcgta 46020513  T
Q  796 attcaaacttcgaacagaggccgcaactgatgtgaaagaacaaaattggcaacacatctctaatcacactacaaacacaaacac 879  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46020512 attcaaacttcaaacagaggccgcaactgatgtgaaagaacaaaattggcaacacatctctaatcacactacaaacacaaacac 46020429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 177; E-Value: 8e-95
Query Start/End: Original strand, 926 - 1110
Target Start/End: Original strand, 46246534 - 46246718
Alignment:
Q  926 ctaacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttct 1025  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46246534 ctaacaatggcgatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccactttct 46246633  T
Q  1026 caaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctccaaatgaagctag 1110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46246634 caaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctccaaatgaagctag 46246718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 928 - 1110
Target Start/End: Complemental strand, 46020403 - 46020221
Alignment:
Q  928 aacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttctca 1027  Q
    ||||||||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46020403 aacaatggcgatggagattgcagctatggcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttctca 46020304  T
Q  1028 aaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctccaaatgaagctag 1110  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46020303 aaacctcaacttagacgcatatcgttaccaacatcaaccaccatttcactacttactctcttcatccctccaaatgaagctag 46020221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 454 - 633
Target Start/End: Complemental strand, 46021538 - 46021346
Alignment:
Q  454 gaacattaattgcatttcttaatctgtcaaaacaacttatcattggaatggatggagcaattaaatgagctgaatttctaaagtatggaaacaataccaa 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46021538 gaacattaattgcatttcttaatctgtcaaaacaacttatcattggaatggatggagcaattaaatgagctgaatttctaaagtatggaaacaataccaa 46021439  T
Q  554 gataagcataacctttccaaagtatggccgcaataccaagat-------------ttatgtgcatattaacattcaatcaagaggttgcattt 633  Q
    ||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||    
T  46021438 gataagcataacctttccaaagtatggccgcaataccaagataaacataaccaacttatgtgcatattaacattcaatcaagaggttgcattt 46021346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 598 - 727
Target Start/End: Complemental strand, 46015478 - 46015349
Alignment:
Q  598 atgtgcatattaacattcaatcaagaggttgcattttcatnnnnnnnnnnnnnnnnnngaattgtatcttcacatggttttaaacttaaaaggtaaatca 697  Q
    ||||||||||||||| ||||||||||||||||||||||||                  ||||| |||||||||||||||||||||| |||| ||| ||||    
T  46015478 atgtgcatattaacactcaatcaagaggttgcattttcataaaacaggaaaacaacaagaattttatcttcacatggttttaaactcaaaatgtacatca 46015379  T
Q  698 taacagatggattaagtgcatgtcaaccaa 727  Q
    |||||||||||| |||||||||| ||||||    
T  46015378 taacagatggatgaagtgcatgttaaccaa 46015349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 46428793 - 46428730
Alignment:
Q  97 ttatttcaaaagcaatgctaaaggcctcataaacatagttaagatttccagaagaacttgccttaa 162  Q
    |||||| |||||||||||| |||||| ||  ||| |||||||||||||||||||||||||||||||    
T  46428793 ttatttaaaaagcaatgcttaaggccaca--aacttagttaagatttccagaagaacttgccttaa 46428730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 657 - 714
Target Start/End: Complemental strand, 46020858 - 46020801
Alignment:
Q  657 aattgtatcttcacatggttttaaacttaaaaggtaaatcataacagatggattaagt 714  Q
    |||||||||||||||| |||||||| | |||| |||||||||||||||||||| ||||    
T  46020858 aattgtatcttcacatagttttaaagtcaaaacgtaaatcataacagatggatcaagt 46020801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 46303465 - 46303583
Alignment:
Q  41 ttggaaattgatattatggaattcaagtatgcacaaagaaactatttttctaaaacttatttcaaaagcaatgctaaaggcctcataaacatagttaaga 140  Q
    ||||||||||||||||  ||||| || ||||||||||  |  ||  ||| | |||||| | |||||||||||| |||||||| ||| ||| ||||| |||    
T  46303465 ttggaaattgatattaaagaattgaaatatgcacaaaaga--taaatttgtgaaacttgtatcaaaagcaatgataaaggccacattaacttagttgaga 46303562  T
Q  141 tttccagaagaacttgcctta 161  Q
    ||||||||||||||| |||||    
T  46303563 tttccagaagaacttccctta 46303583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 514 - 547
Target Start/End: Original strand, 46246080 - 46246113
Alignment:
Q  514 ttaaatgagctgaatttctaaagtatggaaacaa 547  Q
    ||||||||||||||||||||||||||||||||||    
T  46246080 ttaaatgagctgaatttctaaagtatggaaacaa 46246113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 656 - 725
Target Start/End: Original strand, 46303835 - 46303904
Alignment:
Q  656 gaattgtatcttcacatggttttaaacttaaaaggtaaatcataacagatggattaagtgcatgtcaacc 725  Q
    ||||||| ||||||||| |||||||| | ||||  ||||||||||||||||||| || ||||||| ||||    
T  46303835 gaattgtgtcttcacatagttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgttaacc 46303904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 866 - 899
Target Start/End: Original strand, 46246503 - 46246536
Alignment:
Q  866 acaaacacaaacactactccacttcactcctcta 899  Q
    ||||||||||||||||||||||||||||| ||||    
T  46246503 acaaacacaaacactactccacttcactcttcta 46246536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 596 - 637
Target Start/End: Original strand, 3802617 - 3802658
Alignment:
Q  596 ttatgtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3802617 ttatgtgcatattaacactcaatcaagaggttgcattttcat 3802658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 656 - 720
Target Start/End: Original strand, 3801753 - 3801817
Alignment:
Q  656 gaattgtatcttcacatggttttaaacttaaaaggtaaatcataacagatggattaagtgcatgt 720  Q
    ||||||| |||||||||||||||||| | ||||  ||||||||||||||||||| || |||||||    
T  3801753 gaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgt 3801817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 667 - 725
Target Start/End: Original strand, 3804121 - 3804179
Alignment:
Q  667 tcacatggttttaaacttaaaaggtaaatcataacagatggattaagtgcatgtcaacc 725  Q
    ||||||||||||||| | ||||  ||||||||||||||||||| |||||||||| ||||    
T  3804121 tcacatggttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacc 3804179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 600 - 637
Target Start/End: Complemental strand, 50668155 - 50668118
Alignment:
Q  600 gtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  50668155 gtgcatattaacattcaattaagagcttgcattttcat 50668118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 637
Target Start/End: Complemental strand, 50668621 - 50668580
Alignment:
Q  596 ttatgtgcatattaacattcaatcaagaggttgcattttcat 637  Q
    ||||||||||||||||| || |||||||| ||||||||||||    
T  50668621 ttatgtgcatattaacactcgatcaagagcttgcattttcat 50668580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 656 - 706
Target Start/End: Original strand, 4522965 - 4523015
Alignment:
Q  656 gaattgtatcttcacatggttttaaacttaaaaggtaaatcataacagatg 706  Q
    ||||||| |||||||||||||||||| | ||||  ||||||||||||||||    
T  4522965 gaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatg 4523015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 664 - 718
Target Start/End: Original strand, 4525344 - 4525398
Alignment:
Q  664 tcttcacatggttttaaacttaaaaggtaaatcataacagatggattaagtgcat 718  Q
    |||||||||||||||||| | ||||  || |||||||||||||||| ||||||||    
T  4525344 tcttcacatggttttaaagtcaaaacctagatcataacagatggatgaagtgcat 4525398  T

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