View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9695_10 (Length: 392)

Name: NF9695_10
Description: NF9695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9695_10
NF9695_10
[»] scaffold0010 (1 HSPs)
scaffold0010 (50-320)||(143603-143873)
[»] chr4 (7 HSPs)
chr4 (50-320)||(19726913-19727183)
chr4 (157-317)||(6821913-6822074)
chr4 (169-320)||(17419979-17420130)
chr4 (163-317)||(3575531-3575683)
chr4 (157-246)||(40275198-40275287)
chr4 (329-364)||(19727246-19727281)
chr4 (329-364)||(17419881-17419916)
[»] chr7 (2 HSPs)
chr7 (50-320)||(16067407-16067669)
chr7 (329-364)||(16067732-16067767)
[»] scaffold0061 (2 HSPs)
scaffold0061 (157-318)||(16112-16273)
scaffold0061 (157-318)||(25170-25331)
[»] scaffold0170 (1 HSPs)
scaffold0170 (157-320)||(18198-18361)
[»] chr2 (7 HSPs)
chr2 (158-320)||(24315740-24315901)
chr2 (176-317)||(23246419-23246559)
chr2 (157-317)||(7902316-7902475)
chr2 (229-320)||(22522103-22522194)
chr2 (170-246)||(20183107-20183183)
chr2 (155-212)||(22522195-22522252)
chr2 (329-362)||(24315964-24315997)
[»] scaffold0408 (2 HSPs)
scaffold0408 (160-317)||(15505-15662)
scaffold0408 (329-362)||(15406-15439)
[»] chr6 (6 HSPs)
chr6 (160-317)||(14747070-14747227)
chr6 (160-317)||(7848918-7849076)
chr6 (157-314)||(8886367-8886526)
chr6 (169-317)||(22394927-22395075)
chr6 (159-226)||(23662874-23662943)
chr6 (329-362)||(14746971-14747004)
[»] chr5 (5 HSPs)
chr5 (170-320)||(25792335-25792484)
chr5 (170-320)||(25755766-25755914)
chr5 (172-320)||(19020696-19020844)
chr5 (329-364)||(25755977-25756012)
chr5 (172-229)||(25931776-25931833)
[»] scaffold1043 (2 HSPs)
scaffold1043 (182-320)||(1-137)
scaffold1043 (329-362)||(200-233)
[»] chr8 (1 HSPs)
chr8 (161-245)||(11281549-11281631)


Alignment Details
Target: scaffold0010 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 50 - 320
Target Start/End: Complemental strand, 143873 - 143603
Alignment:
Q  50 gttggcgctctattgtgtcattgcactgcatgacagcaaggagaggtgtattgtgtacatgtcaaaccgttccagttgttggttttgtcgagttcgtcat 149  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||||  |||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  143873 gttggcgctctattgtgtcgttgcactgcttgacagaaaggagaggtgtgatgtgtacatgtcaaactgttcgagttgttggttttgtggagttcgtcat 143774  T
Q  150 gtttttaaaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaag 249  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  143773 atttttaaaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaactgagatgaaggggaaatccgtatttcccaaag 143674  T
Q  250 ttcttacggggctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  143673 ttcttacggggctcaccgcgacggttgtagccctttgagggaataattaattaatgtgcaaatttagacgt 143603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 50 - 320
Target Start/End: Original strand, 19726913 - 19727183
Alignment:
Q  50 gttggcgctctattgtgtcattgcactgcatgacagcaaggagaggtgtattgtgtacatgtcaaaccgttccagttgttggttttgtcgagttcgtcat 149  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  19726913 gttggcgctctattgtgtcgttgcactgcttgacagaaaggagaggtgtactgtgtacatgtcaaaccgttcgagttgttggttttgtcgagtttgtcat 19727012  T
Q  150 gtttttaaaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaag 249  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||    
T  19727013 gtttt-aaaagcttcaattcaggtatggggtgagagagaaaagttcgagatcatgagtgtaaattaactgagatgaacgagaaagccgtatttcccaaag 19727111  T
Q  250 -ttcttacggggctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
     |||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  19727112 tttcttacggggctcaccgcgacggttgtagccctttgagggaatatttaattaatgtgcaaatttagacgt 19727183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 157 - 317
Target Start/End: Complemental strand, 6822074 - 6821913
Alignment:
Q  157 aaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttac 256  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||||| |      
T  6822074 aaagcttcaattcaggtatggggtgagagagaagagtttgagatcatgaatgtaaattaactgagatgaacgggaaagtcgtatttcccaaagttcgttt 6821975  T
Q  257 ggggctcaccgcgacagttgtagccctttgagggaataatt-aattattgtgcaaatttaga 317  Q
    |||| |||||||||| |||||||||||| ||| |||| ||| ||||| ||||||||||||||    
T  6821974 ggggttcaccgcgacggttgtagcccttggagagaatgattaaattaatgtgcaaatttaga 6821913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 169 - 320
Target Start/End: Complemental strand, 17420130 - 17419979
Alignment:
Q  169 caggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggggctcaccgc 268  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||  ||||||||||||||||  | || |||| |||||    
T  17420130 caggtatggggtgagagagaagagtttgagatcatgagtgtaaattaactgagatgaacgggaaaatcgtatttcccaaagtttattcgaggcttaccgc 17420031  T
Q  269 gacagttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
     || |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  17420030 aacggttgtagccctttgagagaataattaattaatgtgcaaatttagacgt 17419979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 3575531 - 3575683
Alignment:
Q  163 tcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggggct 262  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||  ||||||||||||||| |||||||| | | |||||    
T  3575531 tcaattcaggtatggggtgagagagaagagttcgagatcat-agcgtaaataaactgagatgaacaggaaagccgtatttctcaaagttcat-ctgggct 3575628  T
Q  263 caccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttaga 317  Q
      ||||||| || | |||| |||||| ||||||||||||| ||| ||||||||||    
T  3575629 tgccgcgacggtggaagccttttgagagaataattaattaatgtccaaatttaga 3575683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 40275287 - 40275198
Alignment:
Q  157 aaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttccca 246  Q
    ||||| ||||| ||| ||||||||||| || ||||||||||| ||||||||||||| ||| |  ||||||  ||||| ||||||||||||    
T  40275287 aaagcctcaatccagatatggggtgagggaaaagagttcgaggtcatgagtgtaaaataattgtgatgaaccggaaacccgtatttccca 40275198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 364
Target Start/End: Original strand, 19727246 - 19727281
Alignment:
Q  329 atgtggtatttgaagtcatggatagatttgtgtgtg 364  Q
    ||||||||||||||||||||||||||||||||||||    
T  19727246 atgtggtatttgaagtcatggatagatttgtgtgtg 19727281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 364
Target Start/End: Complemental strand, 17419916 - 17419881
Alignment:
Q  329 atgtggtatttgaagtcatggatagatttgtgtgtg 364  Q
    |||||||||||||||||||||||| |||||||||||    
T  17419916 atgtggtatttgaagtcatggataaatttgtgtgtg 17419881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 50 - 320
Target Start/End: Original strand, 16067407 - 16067669
Alignment:
Q  50 gttggcgctctattgtgtcattgcactgcatgacagcaaggagaggtgtattgtgtacatgtcaaaccgttccagttgttggttttgtcgagttcgtcat 149  Q
    ||||||||||||||||||| |||||| || ||| || |||||||||| ||       ||||||||||||||| |||||||||||||||||||||||||||    
T  16067407 gttggcgctctattgtgtcgttgcacggcttgatagaaaggagaggttta-------catgtcaaaccgttcgagttgttggttttgtcgagttcgtcat 16067499  T
Q  150 gtttttaaaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaag 249  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||    
T  16067500 gtttataaaagcttcaattcaggtatgggttgagagagaagagttcgagatcatgagtgtaaa-taactaagatgaacgggaaagctgtatttcccaaag 16067598  T
Q  250 ttcttacggggctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  16067599 ttcttacggggctcaccgcgacggttgtagccctttgagggaataattaattaatgtgcaaatttagacgt 16067669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 364
Target Start/End: Original strand, 16067732 - 16067767
Alignment:
Q  329 atgtggtatttgaagtcatggatagatttgtgtgtg 364  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16067732 atgtggtatttgaagtcatggatagatttgtttgtg 16067767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 157 - 318
Target Start/End: Original strand, 16112 - 16273
Alignment:
Q  157 aaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttac 256  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||| | |    
T  16112 aaagcttcatatcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaactgagttgaacgggaaagccgtattttccaaagttcattc 16211  T
Q  257 ggggctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttagac 318  Q
    |||||| |||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  16212 ggggcttaccgcgacggttgtagccctttgagagaataattaattaatgtgcaaatttagac 16273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 157 - 318
Target Start/End: Original strand, 25170 - 25331
Alignment:
Q  157 aaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttac 256  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||| | |    
T  25170 aaagcttcatatcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaactgagttgaacgggaaagccgtattttccaaagttcattc 25269  T
Q  257 ggggctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttagac 318  Q
    |||||| |||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  25270 ggggcttaccgcgacggttgtagccctttgagagaataattaattaatgtgcaaatttagac 25331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 18361 - 18198
Alignment:
Q  157 aaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttac 256  Q
    |||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||  |||||| |||||||| | |    
T  18361 aaagtttcaatctaggtatggggtgagaaagaagagttcgagatcatgagtgtaaattaactgagattaatgggaaagctatatttctcaaagttcattc 18262  T
Q  257 ggggctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  18261 ggggctcaccgcgacggttgtagccctttgagggaataattaattaatgtgcaaatttagacgt 18198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 158 - 320
Target Start/End: Original strand, 24315740 - 24315901
Alignment:
Q  158 aagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacg 257  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||| | |     
T  24315740 aagcttcaattaaggtatggagtgagagagaagagttcgagatcatgagtgtaaattaactgagatgaacgggaaagtcgtattttccaaagttcattc- 24315838  T
Q  258 gggctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
    ||||||||||| || | |||||||||||||| ||||||||||||| |||||||||||||||||    
T  24315839 gggctcaccgcaacggatgtagccctttgagagaataattaattaatgtgcaaatttagacgt 24315901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 23246419 - 23246559
Alignment:
Q  176 ggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggggctcaccgcgacagtt 275  Q
    |||||| ||||||||| |||||||||| ||||||||||||| | ||||||| ||||||||| ||||||||||||||| | | ||||||   ||||  |||    
T  23246419 ggggtgtgagagaagatttcgagatcacgagtgtaaattaattgagatgaacgggaaagccttatttcccaaagttcattc-gggctcgatgcgatggtt 23246517  T
Q  276 gtagccctttgagggaataattaattattgtgcaaatttaga 317  Q
    |||| |||||||| ||||||||||||| ||||||||||||||    
T  23246518 gtagtcctttgagagaataattaattaatgtgcaaatttaga 23246559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 157 - 317
Target Start/End: Original strand, 7902316 - 7902475
Alignment:
Q  157 aaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttac 256  Q
    |||||||||||   || |||||||||||||||||||||||||  |||||||||||| | | |  || ||| ||||||| | ||||||| ||| |  || |    
T  7902316 aaagcttcaatctgggcatggggtgagagagaagagttcgagtacatgagtgtaaaatgattgtgacgaacgggaaagtcatatttccaaaattgatt-c 7902414  T
Q  257 ggggctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttaga 317  Q
    ||||||||| ||||  |||| ||||| ||||| ||||||||||||| ||||||||||||||    
T  7902415 ggggctcactgcgatggttgcagccccttgagagaataattaattaatgtgcaaatttaga 7902475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 22522194 - 22522103
Alignment:
Q  229 ggaaagccgtatttcccaaagttcttacggggctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
    |||||||| ||||||||||||||| | |||||||  | ||||| |||||| |||||| |  ||||||||||||| |||||||||||||||||    
T  22522194 ggaaagccatatttcccaaagttcattcggggcttgctgcgacggttgtaaccctttaaaagaataattaattaatgtgcaaatttagacgt 22522103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 20183107 - 20183183
Alignment:
Q  170 aggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttccca 246  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||| |  |||||| ||||||   ||||||||||    
T  20183107 aggtatggggtgagagagaagagttcaagatcatgagtgtaatttaaatgggatgaacgggaaaattgtatttccca 20183183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 22522252 - 22522195
Alignment:
Q  155 taaaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaa 212  Q
    ||||||||||||  |||||||||  ||||||||||||||| |||||||||||| ||||    
T  22522252 taaaagcttcaaaccaggtatggattgagagagaagagtttgagatcatgagtataaa 22522195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 24315964 - 24315997
Alignment:
Q  329 atgtggtatttgaagtcatggatagatttgtgtg 362  Q
    |||||||||||||||||||||||| |||||||||    
T  24315964 atgtggtatttgaagtcatggataaatttgtgtg 24315997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 160 - 317
Target Start/End: Complemental strand, 15662 - 15505
Alignment:
Q  160 gcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||| |||||||  |||||||| | ||||    
T  15662 gcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaattgagaagaacgggaaagtcgtatttttcaaagttcattcggg 15563  T
Q  260 gctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttaga 317  Q
    ||||||| |||| | ||||| |||||||| | ||||||||||| ||||||||||||||    
T  15562 gctcaccacgacggatgtagtcctttgagaggataattaattaatgtgcaaatttaga 15505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 15439 - 15406
Alignment:
Q  329 atgtggtatttgaagtcatggatagatttgtgtg 362  Q
    |||||||||||||||||||||||| |||||||||    
T  15439 atgtggtatttgaagtcatggataaatttgtgtg 15406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 9e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 160 - 317
Target Start/End: Complemental strand, 14747227 - 14747070
Alignment:
Q  160 gcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||| |||||||  |||||||| | ||||    
T  14747227 gcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaattgagaagaacgggaaagtcgtatttttcaaagttcattcggg 14747128  T
Q  260 gctcaccgcgacagttgtagccctttgagggaataattaattattgtgcaaatttaga 317  Q
    ||||||| |||| | ||||| |||||||| | ||||||||||| ||||||||||||||    
T  14747127 gctcaccacgacggatgtagtcctttgagaggataattaattaatgtgcaaatttaga 14747070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 160 - 317
Target Start/End: Complemental strand, 7849076 - 7848918
Alignment:
Q  160 gcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaatt-aacttagatgaatgggaaagccgtatttcccaaagttcttacgg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||  | | |    
T  7849076 gcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaaactgagatgaaggggaaagtcgtatttcccaaagtttgttc-g 7848978  T
Q  259 ggctcaccgcgacagttgtagccctttgagggaataattaa-ttattgtgcaaatttaga 317  Q
    |||| |||||||| |||||||||||| ||| |||||||||| ||| |||| |||||||||    
T  7848977 ggcttaccgcgacggttgtagcccttggagagaataattaatttaatgtgtaaatttaga 7848918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 314
Target Start/End: Complemental strand, 8886526 - 8886367
Alignment:
Q  157 aaagcttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaa-tgggaaagccgtatttcccaaagttctta 255  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||  |||||||||| |||||||||||||| |     
T  8886526 aaagcttcgatttaggtatgtggtgagagagaagagttcgagatcattagtataaattaactgagatgaacggggaaagccgaatttcccaaagttcatt 8886427  T
Q  256 cggggctcaccgcgacagttgtagccctttgagggaataat-taattattgtgcaaattt 314  Q
    ||||| ||  || ||| ||||||||||||||||  ||||||  ||||| |||||||||||    
T  8886426 cggggttcgtcgtgacggttgtagccctttgagataataatcaaattaatgtgcaaattt 8886367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 317
Target Start/End: Original strand, 22394927 - 22395075
Alignment:
Q  169 caggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggggctcaccgc 268  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| | |||| ||  ||||| |  ||||||||||||||| | |||||||| | ||    
T  22394927 caggtatggggtgagggaaaagagttcgagatcatgagtgtaaattaattgagataaacaggaaaacaatatttcccaaagttcattcggggctccctgc 22395026  T
Q  269 gacagttgtagccctttgagggaataattaattattgtgcaaatttaga 317  Q
    ||| ||| |||||||| ||| ||||||| ||||| |||| |||||||||    
T  22395027 gacggttatagcccttcgagagaataatgaattaatgtgaaaatttaga 22395075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 23662943 - 23662874
Alignment:
Q  159 agcttcaattcaggtatggggtgagagaga--agagttcgagatcatgagtgtaaattaacttagatgaa 226  Q
    ||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||    
T  23662943 agcttcaatccaggtatggggtgagagagagaagagtttgagatcatgagtgtaaattaactaagatgaa 23662874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 14747004 - 14746971
Alignment:
Q  329 atgtggtatttgaagtcatggatagatttgtgtg 362  Q
    |||||||||||||||||||||||| |||||||||    
T  14747004 atgtggtatttgaagtcatggataaatttgtgtg 14746971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 170 - 320
Target Start/End: Complemental strand, 25792484 - 25792335
Alignment:
Q  170 aggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggggctcaccgcg 269  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||| ||||||||| | |||||| || |||     
T  25792484 aggtatggggtaagagagaagagttcgagatcatgagtgtaaattaattgagatgaacgggaa-gccgtattttccaaagttcattcggggcccatcgca 25792386  T
Q  270 acagttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
    || |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  25792385 acggttgcagccctttgagggaataattaattaatgtgcaaatttagacgt 25792335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 320
Target Start/End: Original strand, 25755766 - 25755914
Alignment:
Q  170 aggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggggctcaccgcg 269  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||| ||||||||| | |||||| |  ||||    
T  25755766 aggtatggggtcaaagagaagagttcgagatcatgagtgtaaattaattgagatgaacgggaa-gccgtattttccaaagttcattcggggc-cgtcgcg 25755863  T
Q  270 acagttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||    
T  25755864 acggttgtagccctttgagggaataattaattaatgtgcaaatttagacgt 25755914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 172 - 320
Target Start/End: Complemental strand, 19020844 - 19020696
Alignment:
Q  172 gtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggggctcaccgcgac 271  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||  |||||||| | ||  |||| | |||||    
T  19020844 gtatggggtgagagagaagagtttgagatcatgagtataaattaactgagatgaacgggaaagccgtatttttcaaagttcattcgaagctcgctgcgac 19020745  T
Q  272 agttgtagccctttgagggaataattaattattgtgcaaatttagacgt 320  Q
    | ||||| | ||||||| ||||||||||||| |||||||||||||||||    
T  19020744 aattgtatctctttgagagaataattaattaatgtgcaaatttagacgt 19020696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 364
Target Start/End: Original strand, 25755977 - 25756012
Alignment:
Q  329 atgtggtatttgaagtcatggatagatttgtgtgtg 364  Q
    |||||||||||||||||||||||| |||||||||||    
T  25755977 atgtggtatttgaagtcatggataaatttgtgtgtg 25756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 25931776 - 25931833
Alignment:
Q  172 gtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgg 229  Q
    |||||||||||| ||||||||||||||  |||||||||||| ||| |  |||||||||    
T  25931776 gtatggggtgagggagaagagttcgagtacatgagtgtaaaataattgggatgaatgg 25931833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 320
Target Start/End: Original strand, 1 - 137
Alignment:
Q  182 agagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttcccaaagttcttacggggctcaccgcgacagttgtagcc 281  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| | | ||||| || ||||| | ||||||     
T  1 agagagaagagttcgagatcatgagtgtaaattaa-tgagatgaatgggaaagtcgtatttcccaaagttcattc-gggcttactgcgacggatgtagct 98  T
Q  282 ctttgagggaataattaattattgtgcaaatttagacgt 320  Q
    ||||||| ||||||||| ||| |||||||||||||||||    
T  99 ctttgagagaataattatttaatgtgcaaatttagacgt 137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 362
Target Start/End: Original strand, 200 - 233
Alignment:
Q  329 atgtggtatttgaagtcatggatagatttgtgtg 362  Q
    |||||||||||||||||||||||| |||||||||    
T  200 atgtggtatttgaagtcatggataaatttgtgtg 233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 11281549 - 11281631
Alignment:
Q  161 cttcaattcaggtatggggtgagagagaagagttcgagatcatgagtgtaaattaacttagatgaatgggaaagccgtatttccc 245  Q
    |||||||| |||||||||||||||  ||||||||||||| |||| || |||||||| | ||||||| || ||||  |||||||||    
T  11281549 cttcaattgaggtatggggtgaga--gaagagttcgagaccatgggtataaattaaatgagatgaacggaaaagttgtatttccc 11281631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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