View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9695_13 (Length: 322)
Name: NF9695_13
Description: NF9695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9695_13 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 149 - 322
Target Start/End: Complemental strand, 25099053 - 25098880
Alignment:
| Q |
149 |
tactccctccgttccttaatataaccccc-atttcatttttcacattttttaaagaaatattatctgtgcagttaatgtgtctgatttatgttacaattt |
247 |
Q |
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|||||||||||| |||||||||||||||| ||| |||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
25099053 |
tactccctccgtcccttaatataaccccccattgcatttttcacatttcttaaa-aaatgttgtctgtgcagttaatgtgtctgatttatgttacaattt |
25098955 |
T |
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| Q |
248 |
tattaaactaccttcattccactattaatggattacctcggttgtctttattatacttacattaattgtactttt |
322 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25098954 |
tactaaactaccctcattccactattaatggattacctcggttgcctttattatacttacattaattgtactttt |
25098880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 25602451 - 25602301
Alignment:
| Q |
1 |
agtgaagaaaacggcaagtttgactcatttcttattccagctcactctttcaaggttatgaattacgtcttatgattcacgggagtaatacacactc--t |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
25602451 |
agtgaagaaaacggcaagtttgactcatttcttattccagctcactctcttaaggttatgaattacgtctgatgattcacgggagtaatacacactctgt |
25602352 |
T |
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| Q |
99 |
gggacggagtaaaggccattgaaaaaagaacataaccttggcataagtaata |
150 |
Q |
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| T |
25602351 |
gggacggagtaaaggccattgaaaaaagaacataacctt-gcataagtaata |
25602301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 149 - 322
Target Start/End: Complemental strand, 12845130 - 12844957
Alignment:
| Q |
149 |
tactccctccgttccttaatataaccccc-atttcatttttcacattttttaaagaaatattatctgtgcagttaatgtgtctgatttatgttacaattt |
247 |
Q |
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|||||||||||| |||||||||||||||| ||| |||||||||||||| |||| ||||| || |||||||||||||||||| |||||||||||||||||| |
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| T |
12845130 |
tactccctccgtcccttaatataaccccccattgcatttttcacatttcttaa-gaaatgttgtctgtgcagttaatgtgtttgatttatgttacaattt |
12845032 |
T |
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| Q |
248 |
tattaaactaccttcattccactattaatggattacctcggttgtctttattatacttacattaattgtactttt |
322 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12845031 |
tactaaactaccctcattccactattaatggattacctcggttgtctttattatacttacattaattgtactttt |
12844957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 149 - 322
Target Start/End: Complemental strand, 50438982 - 50438809
Alignment:
| Q |
149 |
tactccctccgttccttaatataaccccc-atttcatttttcacattttttaaagaaatattatctgtgcagttaatgtgtctgatttatgttacaattt |
247 |
Q |
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|||||||||||| |||||||||||||||| ||| |||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
50438982 |
tactccctccgtcccttaatataaccccccattacatttttcacatttcttaa-gaaatgttgtctgtgcagttaatgtgtctgatttatgttacaattt |
50438884 |
T |
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| Q |
248 |
tattaaactaccttcattccactattaatggattacctcggttgtctttattatacttacattaattgtactttt |
322 |
Q |
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|| ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50438883 |
tactaaactaccctcattccacaattaatggattacctcggttgcctttattatacttacattaattgtactttt |
50438809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 164 - 322
Target Start/End: Original strand, 27441753 - 27441911
Alignment:
| Q |
164 |
ttaatataaccccc-atttcatttttcacattttttaaagaaatattatctgtgcagttaatgtgtctgatttatgttacaattttattaaactaccttc |
262 |
Q |
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|||||||||||||| ||| |||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
27441753 |
ttaatataaccccccattgcatttttcacatttattaa-gaaatgttgtctgtgcagttaatgtgtctgatttatgttacaattttactaaactaccctc |
27441851 |
T |
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| Q |
263 |
attccactattaatggattacctcggttgtctttattatacttacattaattgtactttt |
322 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27441852 |
attccactattaatggattacctcggttgcctttattatacttacattaattgtactttt |
27441911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 149 - 322
Target Start/End: Complemental strand, 3308055 - 3307882
Alignment:
| Q |
149 |
tactccctccgttccttaatataacccc-catttcatttttcacattttttaaagaaatattatctgtgcagttaatgtgtctgatttatgttacaattt |
247 |
Q |
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|||||||||| | ||||||||||||| |||| |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3308055 |
tactccctccctcccttaatataacctttcattgcatttttcacatttcttaa-gaaatattgtctgtgcagttaatgtgtctgatttatgttacaattt |
3307957 |
T |
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| Q |
248 |
tattaaactaccttcattccactattaatggattacctcggttgtctttattatacttacattaattgtactttt |
322 |
Q |
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| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3307956 |
aactaaactaccctcattccactattaatggattacctcggttgcctttattatacttacattaattgtactttt |
3307882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 164 - 322
Target Start/End: Complemental strand, 45608 - 45450
Alignment:
| Q |
164 |
ttaatataaccccc-atttcatttttcacattttttaaagaaatattatctgtgcagttaatgtgtctgatttatgttacaattttattaaactaccttc |
262 |
Q |
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|||||||||||||| ||| |||||||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
45608 |
ttaatataaccccccattgcatttttcacatttattaat-aaatgttgtctgtgcagttaatgtgtctgatttatgttacaattttactaaactaccctc |
45510 |
T |
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| Q |
263 |
attccactattaatggattacctcggttgtctttattatacttacattaattgtactttt |
322 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45509 |
attccactattaatggattacctcggttgcctttattatacttacattaattgtactttt |
45450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 16356698 - 16356809
Alignment:
| Q |
211 |
tctgtgcagttaatgtgtctgatttatgttacaattttattaaactaccttcattccactattaatggattacctcggttgtctttattatacttacatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
16356698 |
tctgtgcagttaatgtgtctgatttatgttacaattttactaaactaccctcattccactatttatggattacctcggttgcctttattatacttacatt |
16356797 |
T |
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| Q |
311 |
aattgtactttt |
322 |
Q |
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|||||||||||| |
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| T |
16356798 |
aattgtactttt |
16356809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 16355784 - 16355838
Alignment:
| Q |
148 |
atactccctccgttccttaatataa-cccccatttcatttttcacattttttaaa |
201 |
Q |
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||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| |
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| T |
16355784 |
atactccctccgtcccttaatataatcccccattgcatttttcacatttcttaaa |
16355838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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