View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9695_2 (Length: 967)

Name: NF9695_2
Description: NF9695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9695_2
NF9695_2
[»] chr8 (3 HSPs)
chr8 (42-941)||(31032779-31033687)
chr8 (617-766)||(31027882-31028034)
chr8 (97-155)||(13031592-13031650)
[»] chr5 (1 HSPs)
chr5 (8-515)||(41385766-41386273)
[»] chr6 (2 HSPs)
chr6 (38-515)||(27848899-27849373)
chr6 (81-161)||(11644739-11644819)
[»] chr4 (10 HSPs)
chr4 (202-515)||(24132139-24132452)
chr4 (38-298)||(4402318-4402577)
chr4 (433-481)||(14292708-14292756)
chr4 (433-481)||(14308757-14308805)
chr4 (119-159)||(14293030-14293070)
chr4 (119-159)||(14309079-14309119)
chr4 (89-164)||(9789320-9789395)
chr4 (129-159)||(55237394-55237424)
chr4 (103-156)||(18318007-18318060)
chr4 (103-156)||(18400619-18400672)
[»] scaffold0535 (2 HSPs)
scaffold0535 (321-508)||(2718-2905)
scaffold0535 (44-298)||(8003-8256)
[»] chr7 (2 HSPs)
chr7 (440-506)||(18345988-18346054)
chr7 (433-480)||(45716455-45716502)
[»] chr1 (1 HSPs)
chr1 (451-515)||(18900329-18900393)


Alignment Details
Target: chr8 (Bit Score: 627; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 42 - 941
Target Start/End: Complemental strand, 31033687 - 31032779
Alignment:
Q  42 gtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttcc 141  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  31033687 gtgcaatatttctatggtt-gagcaaaaagagagtagggacagagtcgtggtaggctaaccaaaaaagaaacttgagttttttcggaagctttaatttcc 31033589  T
Q  142 aaatccaagaccaagagaaattaaaattaaaatgagataccgtgtctgtgcggggctgaaaccaagtgtagcca----ctcttggtagtgtaagtaccat 237  Q
    ||||||||||||||||| ||||| |||||||||||||||  ||||||||| ||||| | || ||||||||||||    |||||| ||||||| |||||||    
T  31033588 aaatccaagaccaagaggaattagaattaaaatgagatattgtgtctgtgtggggcagcaaacaagtgtagccagccactcttgatagtgtaggtaccat 31033489  T
Q  238 ttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaatgttattgatgaaatcggtaaccaaaggagggagatgagagta 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||  |||||| ||||||| ||||||||    
T  31033488 ttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatatgaatattattgatgaaattggctaccaaatgagggaggtgagagta 31033389  T
Q  338 caaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaaaagacactatgaaacca 437  Q
    |||||    |||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  31033388 caaaac---agtgtaaggaccattggtggaaagcacatctttaactgtcaagttcaagtcatggatgtctatgtaaggaggaaaagacactaagaaacca 31033292  T
Q  438 aaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcatttattgagtgatctaaaggggtaa 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31033291 aaggagctccaaggacaaaaccaaaaggaagaactacctgatcccaaatgccaagagaatccgtctttgagagcatttattgagtgatctaaaggggtaa 31033192  T
Q  538 acatgactcatgtatgtacataaaagacaaaatcannnnnnngcatctccattagttctgnnnnnnntcattatatataaaattgatacacaaatttatc 637  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||       ||||||||||| ||||| |||||||||||||||    
T  31033191 acatgactcatgtatgtacataaaagacaaaatca-ttttttgcatctccattagttctgaaaaaaatcattatatat-aaattaatacacaaatttatc 31033094  T
Q  638 gtttttacatcaaaagaagaaaaactatgactaagtttctcaagtttgtttattttctgatgagcttgatttccacattttttgttgtaaggcacggtaa 737  Q
     ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31033093 ttttttacatcaaaagaagaaaaaatatgagtaagtttctcaagtttgtttattttctgatgagcttgatttccacattttttgttgtaaggcacggtaa 31032994  T
Q  738 ctcaggtatgacctttctctcatccttttcaaatttttgctttaccttatacatg-----------catatgttaatattggttacttctttgttataca 826  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||           ||||||||||||||| ||||||||||||||||||    
T  31032993 ctcaggtatgacctttctctcatccttttcaaatttttgctttacattatacatgcatttttaccccatatgttaatattgattacttctttgttataca 31032894  T
Q  827 ttacagcatcacctaaatattgtatgcacggcgatgattgtaatattttgtgtcctaatcctttgatgggaatttgtactgattatcaatgtatatgtat 926  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31032893 ttacagcatcacctaaatattgtatgcacggcgatgattgtaatattttgtgtcctaatcctttgatgggaatttgtactgattatcaatgtatatgtat 31032794  T
Q  927 gtaacggttaaagat 941  Q
     |||| |||||||||    
T  31032793 ataactgttaaagat 31032779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 617 - 766
Target Start/End: Original strand, 31027882 - 31028034
Alignment:
Q  617 aaattgatacacaaatttatcgtttttacatcaaaagaagaaaaac---tatgactaagtttctcaagtttgtttattttctgatgagcttgatttccac 713  Q
    ||||||||| | | ||||||| |||| |||||||||| |||||||    ||||| |||||||||||| ||| |||||  |  ||| | |||||||||||     
T  31027882 aaattgatataaacatttatctttttaacatcaaaaggagaaaaaaaaatatgattaagtttctcaaatttttttatgctacgatcatcttgatttccat 31027981  T
Q  714 attttttgttgtaaggcacggtaactcaggtatgacctttctctcatcctttt 766  Q
    |||||||||||||||| | |  | ||| ||||||||||||| || ||||||||    
T  31027982 attttttgttgtaagggatgaaagctctggtatgacctttcactaatcctttt 31028034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 13031650 - 13031592
Alignment:
Q  97 ctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaa 155  Q
    ||||||||||||||||||| |  |||| ||  |||||||||||||||||||||||||||    
T  13031650 ctaaccaaaaaagaaacttaacctttttcgaaagctttaatttccaaatccaagaccaa 13031592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 515
Target Start/End: Complemental strand, 41386273 - 41385766
Alignment:
Q  8 tcatcaagaccgcaacgtgagcaagtagctgaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaa 107  Q
    ||||||||||| ||||| || ||| |||| || |||||||||||||||||||| ||| |||| |||||||||| || ||| ||||||||| |||||||||    
T  41386273 tcatcaagaccacaacgagaacaaatagccgatggtgcaatatttctatggtt-gagtaaaaggagagtagggtcacagttgtggcaggccaaccaaaaa 41386175  T
Q  108 agaaacttgagtttttccggcagctttaatttccaaatccaagaccaagagaa--attaaaattaaaatgagataccgtgtctgtgcggggctgaaacca 205  Q
    ||||||||| | |||||| | ||||||||||||||||||||||||||| | ||  | || |||||||||||| || ||||| |||| |||   | |||||    
T  41386174 agaaacttgtgcttttccagaagctttaatttccaaatccaagaccaatataagaaatagaattaaaatgagttatcgtgtttgtgtgggatagcaacca 41386075  T
Q  206 agtgtagccactcttggtagtgtaagtaccatttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaatgttattgatg 305  Q
    | ||||| ||||||| |||||||| |||||||||||  |||||||||||| ||||| ||||| ||| | ||| ||| |||| ||||  |||||||||||     
T  41386074 aatgtagtcactcttagtagtgtaggtaccatttttt-taggagtccaaaagaaagaatcttttacagggggattacacttaatgttcatgttattgata 41385976  T
Q  306 aaatcggtaaccaaaggagggagatgagagtacaaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgt 405  Q
    |||||||  |||||||||||||| ||||||||||||| || ||||| ||||  |||| || ||| ||||||| |||||||| | | ||||||||||||||    
T  41385975 aaatcggctaccaaaggagggaggtgagagtacaaaacctaagtgtgaggaatattggtgtagatcacatctctaactgtcgaatgcaagtcgtggatgt 41385876  T
Q  406 ctatataaggaggaaaagacactatgaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtcttt 505  Q
    |||| ||||||||||  |||  ||||||| ||| |||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||| ||||||||    
T  41385875 ctatttaaggaggaagggaccttatgaaatcaagggagctccaaggacaaaaccaaaatgaagaaatacatgatcccacacaccaagagaaaccgtcttt 41385776  T
Q  506 gagagcattt 515  Q
    ||||||||||    
T  41385775 gagagcattt 41385766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 8e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 38 - 515
Target Start/End: Original strand, 27848899 - 27849373
Alignment:
Q  38 gaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaat 137  Q
    ||||| ||||||||| ||||||| ||| ||||  |||||||||  ||| | |||||| || || ||||| || ||||| || ||||| || |||||||||    
T  27848899 gaaggagcaatatttatatggtt-gagtaaaagaagagtaggggaagaattgtggcaagccaagcaaaagaggaacttaagcttttcaggaagctttaat 27848997  T
Q  138 ttccaaatccaagaccaagagaaattaaaattaaaatgagataccgtgtctgtgcggggctgaaaccaagtgtagccactcttggtagtgtaagtaccat 237  Q
    ||||||||||||||||| |||| |  |   |||||||||| ||||||||  |||| |  |   ||||| |  || ||||| |||| |||||| | | |||    
T  27848998 ttccaaatccaagaccacgagagagaagtgttaaaatgagttaccgtgttcgtgcagtacaacaaccaggaataaccacttttggaagtgtaggcatcat 27849097  T
Q  238 ttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaatgttattgatgaaatcggtaaccaaaggagggagatgagagta 337  Q
    ||||| | | | |||||||| ||| |||||||||| |||| || |||||||| || ||||| |  || |||||     |   | ||||||| ||||||||    
T  27849098 ttttgttggaattccaaatggaagaatcttctacgaagggattgaacttgatatgcatgttgt--ataaaatcaaatgctggaagagggaggtgagagta 27849195  T
Q  338 caaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaaaagacactatgaaacca 437  Q
    ||||| |||||||| |||  ||||| |||| |||||||| ||||||||||| | |||||| || |||||||| || |||  || |||  ||| |||  ||    
T  27849196 caaaacctgagtgtgagggtcattggtggatagcacatccttaactgtcaactgcaagtcatgtatgtctatgtagggaacaatagatcctaagaattca 27849295  T
Q  438 aaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt 515  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| || ||||||||| |||||    
T  27849296 agggagctccaaggacaaaaccaaaaggaagaattacctgatcccgcgcgccaagagaaaccatctttgagaacattt 27849373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 11644819 - 11644739
Alignment:
Q  81 acagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagagaaa 161  Q
    ||||||| ||| || ||||||||||  ||||||||||  |||| |||||||  |||||| |||||||||||||||||||||    
T  11644819 acagagttgtgacaagctaaccaaatgagaaacttgatctttttcggcagcagtaattttcaaatccaagaccaagagaaa 11644739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 202 - 515
Target Start/End: Original strand, 24132139 - 24132452
Alignment:
Q  202 accaagtgtagccactcttggtagtgtaagtaccatttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaatgttatt 301  Q
    ||||| |||| |||| ||||||||||||   |||||||||| | | | ||||||| ||| ||||||| | |||||| || ||||||||||| ||||||||    
T  24132139 accaattgtaaccacacttggtagtgtagacaccatttttgttggaactccaaataaaaacatcttccatggagggattgaacttgatgtgcatgttatt 24132238  T
Q  302 gatgaaatcggtaaccaaaggagggagatgagagtacaaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtgg 401  Q
     || ||||| |  |||| || |||  | |||||||||||   | || | |||||||||||| ||||||| |||||| |||  ||||||| ||| || ||     
T  24132239 aataaaatcagctaccatagaaggtcggtgagagtacaagtcccgactataaggaccattggtggagaggacatctctaatagtcaagtgcaaatcatga 24132338  T
Q  402 atgtctatataaggaggaaaagacactatgaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgt 501  Q
    |||||||| || ||   ||  ||  ||| ||| |||| ||||||||||||||||||||||||||||||| |||| || ||||  | ||||| ||| || |    
T  24132339 atgtctatgtaggggacaatggagcctaagaagccaagggagctccaaggacaaaaccaaaaggaagaattaccagaacccgagcgccaagtgaaaccat 24132438  T
Q  502 ctttgagagcattt 515  Q
    ||||||||||||||    
T  24132439 ctttgagagcattt 24132452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 298
Target Start/End: Complemental strand, 4402577 - 4402318
Alignment:
Q  38 gaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaat 137  Q
    ||||| ||||||||| ||||||| ||| ||||  |||||||||||| ||| |||||| || ||||||||||||||  |  | ||||| || ||   ||||    
T  4402577 gaaggagcaatatttatatggtt-gagcaaaagaagagtagggacatagttgtggcaagccaaccaaaaaagaaatctatgcttttcaggaagtagtaat 4402479  T
Q  138 ttccaaatccaagaccaagagaaattaaaattaaaatgagataccgtgtctgtgcggggctgaaaccaagtgtagccactcttggtagtgtaagtaccat 237  Q
    ||||||||||| ||||||||| ||  ||  ||| |||||| |||| |||  || || | |   |||||  ||||||||| ||||||||||||   |||||    
T  4402478 ttccaaatccatgaccaagaggaaacaatgttagaatgagttaccatgttagtacgagacaacaaccatttgtagccacacttggtagtgtagacaccat 4402379  T
Q  238 ttttgctaggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaatgtt 298  Q
    ||||| | | | |||| || ||| ||||||||| |||||| || ||||||||||| |||||    
T  4402378 ttttgttggaactccatataaaaacatcttctatggagggcttgaacttgatgtgcatgtt 4402318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 14292756 - 14292708
Alignment:
Q  433 aaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcc 481  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  14292756 aaccaaaggagctccaagggcaagaccaaaaggaagaactaccggatcc 14292708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 481
Target Start/End: Complemental strand, 14308805 - 14308757
Alignment:
Q  433 aaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcc 481  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  14308805 aaccaaaggagctccaagggcaagaccaaaaggaagaactaccggatcc 14308757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 14293070 - 14293030
Alignment:
Q  119 tttttccggcagctttaatttccaaatccaagaccaagaga 159  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  14293070 tttttctgggagctttaatttccaaatccaagaccaagaga 14293030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 14309119 - 14309079
Alignment:
Q  119 tttttccggcagctttaatttccaaatccaagaccaagaga 159  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  14309119 tttttctgggagctttaatttccaaatccaagaccaagaga 14309079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 9789395 - 9789320
Alignment:
Q  89 gtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagagaaatta 164  Q
    |||||| || ||||||| || ||| |||| |||||||||  | |||| ||||||||||||||||||||||| ||||    
T  9789395 gtggcaagccaaccaaataaaaaatttgattttttccggaggttttagtttccaaatccaagaccaagagatatta 9789320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 159
Target Start/End: Original strand, 55237394 - 55237424
Alignment:
Q  129 agctttaatttccaaatccaagaccaagaga 159  Q
    |||||||||||||||||||||||||||||||    
T  55237394 agctttaatttccaaatccaagaccaagaga 55237424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 18318007 - 18318060
Alignment:
Q  103 aaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaag 156  Q
    |||||||||| |||| ||||||||||||||  || ||||||| |||||||||||    
T  18318007 aaaaaagaaatttgattttttccggcagctaaaacttccaaacccaagaccaag 18318060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 18400672 - 18400619
Alignment:
Q  103 aaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaag 156  Q
    |||||||||| |||| ||||||||||||||  || ||||||| |||||||||||    
T  18400672 aaaaaagaaatttgattttttccggcagctaaaacttccaaacccaagaccaag 18400619  T

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Target: scaffold0535 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 321 - 508
Target Start/End: Complemental strand, 2905 - 2718
Alignment:
Q  321 ggagggagatgagagtacaaaatctgagtgtaaggaccattgctggagagcacatctttaactgtcaagttcaagtcgtggatgtctatataaggaggaa 420  Q
    |||||||| ||||||| |||   ||||||||  ||||||||| ||||||| |||||  |||| ||||||| ||| || || || ||||| || |||  ||    
T  2905 ggagggaggtgagagttcaagtcctgagtgtgtggaccattggtggagaggacatccctaacggtcaagtgcaaatcatgaatatctatgtagggaaaaa 2806  T
Q  421 aagacactatgaaaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgag 508  Q
     |||  ||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||| || | ||||| ||| || ||||||||    
T  2805 tagagcctaagaaatcaagggagctccaaggacaaaaccaaaaggaagaactaccagatcctgcgcgccaagtgaaaccatctttgag 2718  T

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Target: scaffold0535; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 44 - 298
Target Start/End: Complemental strand, 8256 - 8003
Alignment:
Q  44 gcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaa 143  Q
    ||||||||| ||||||| ||| |||| ||||||| ||  ||||| |||||| || |||||||||||||| ||  | ||||||   || ||||||||||||    
T  8256 gcaatatttatatggtt-gagcaaaaggagagtatggtaagagttgtggcaagccaaccaaaaaagaaatttatgcttttccaaaagttttaatttccaa 8158  T
Q  144 atccaagaccaagagaaattaaaattaaaatgagataccgtgtctgtgcggggctgaaaccaagtgtagccactcttggtagtgtaagtaccatttttgc 243  Q
    || |||||||||||| || ||   ||| |||||| |||| |||   |||||| |   |||||  |||| |||| ||||||||||||   ||||||||||     
T  8157 atgcaagaccaagaggaaatagtgttagaatgagttaccatgttgttgcgggacaacaaccacttgtaaccacacttggtagtgtagacaccatttttgt 8058  T
Q  244 taggagtccaaatgaaagcatcttctacggaggggttaaacttgatgtgaatgtt 298  Q
    | | | ||||||| ||||||||||||| | | ||||||||||||||||| |||||    
T  8057 tggaactccaaataaaagcatcttctatgtacgggttaaacttgatgtgcatgtt 8003  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 18346054 - 18345988
Alignment:
Q  440 ggagctccaaggacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttg 506  Q
    |||||||||||||||| ||||||| |||||||||||||||||| | |||||||| || || ||||||    
T  18346054 ggagctccaaggacaagaccaaaaagaagaactacctgatcccactcaccaagataaaccctctttg 18345988  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 433 - 480
Target Start/End: Original strand, 45716455 - 45716502
Alignment:
Q  433 aaccaaaggagctccaaggacaaaaccaaaaggaagaactacctgatc 480  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  45716455 aaccaaaggagctccaagggcaagaccaaaaggaagaactaccggatc 45716502  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 515
Target Start/End: Complemental strand, 18900393 - 18900329
Alignment:
Q  451 gacaaaaccaaaaggaagaactacctgatcccgcacaccaagagaatccgtctttgagagcattt 515  Q
    ||||| |||||||||||||||||||||| ||||||| |||||| || || ||||| |||||||||    
T  18900393 gacaagaccaaaaggaagaactacctgaacccgcacgccaagaaaaaccttctttcagagcattt 18900329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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